Macromolecule Content

Total Structure Weight: 974.25 kDa
Atom Count: 66,477
Modelled Residue Count: 8,140
Deposited Residue Count: 8,322
Unique protein chains: 44

7W4N

Deactive state CI from Q1-NADH dataset, Subclass 5

PDB DOI: https://doi.org/10.2210/pdb7W4N/pdb
EM Map EMD-32309: EMDB EMDataResource

Classification: ELECTRON TRANSPORT
Organism(s): Sus scrofa
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2021-11-28 Released: 2023-01-25
Deposition Author(s): Gu, J., Yang, M.
Funding Organization(s): Ministry of Science and Technology (MoST, China), National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.00 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

The coupling mechanism of mammalian mitochondrial complex I

Gu, J., Liu, T., Guo, R., Zhang, L., Yang, M.

(2022) Nat Struct Mol Biol 29: 172-182

DOI: https://doi.org/10.1038/s41594-022-00722-w

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	A	433	Sus scrofa	Mutation(s): 0 Gene Names: NDUFV1 EC: 7.1.1.2 Membrane Entity: Yes
UniProt
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UniProt Group	F1RVN1
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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	B	176	Sus scrofa	Mutation(s): 0 Gene Names: NDUFS8
UniProt
Find proteins for A0A287BDC0 (Sus scrofa) Explore A0A287BDC0 Go to UniProtKB: A0A287BDC0
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UniProt Group	A0A287BDC0
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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial	C	156	Sus scrofa	Mutation(s): 0 Gene Names: NDUFS7
UniProt
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UniProt Group	I3LK43
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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	D [auth E]	115	Sus scrofa	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for A0A480VKQ8 (Sus scrofa) Explore A0A480VKQ8 Go to UniProtKB: A0A480VKQ8
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UniProt Group	A0A480VKQ8
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2	E [auth F]	86	Sus scrofa	Mutation(s): 0 Gene Names: NDUFA2 Membrane Entity: Yes
UniProt
Find proteins for F1RGE3 (Sus scrofa) Explore F1RGE3 Go to UniProtKB: F1RGE3
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UniProt Group	F1RGE3
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl carrier protein	F [auth G], V [auth X]	88	Sus scrofa	Mutation(s): 0 Gene Names: NDUFAB1
UniProt
Find proteins for D0G781 (Sus scrofa) Explore D0G781 Go to UniProtKB: D0G781
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UniProt Group	D0G781
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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Complex I subunit B13	G [auth H]	112	Sus scrofa	Mutation(s): 0 Gene Names: NDUFA5
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Complex I-B14.5a	H [auth I]	112	Sus scrofa	Mutation(s): 0 Gene Names: NDUFA7 Membrane Entity: Yes
UniProt
Find proteins for A0A4X1VLA2 (Sus scrofa) Explore A0A4X1VLA2 Go to UniProtKB: A0A4X1VLA2
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Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A4X1VLA2
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9, mitochondrial	I [auth J]	342	Sus scrofa	Mutation(s): 0
UniProt
Find proteins for A0A480QJC4 (Sus scrofa) Explore A0A480QJC4 Go to UniProtKB: A0A480QJC4
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UniProt Group	A0A480QJC4
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Complex I-9kD	J [auth K]	43	Sus scrofa	Mutation(s): 0 Gene Names: NDUFV3 Membrane Entity: Yes
UniProt
Find proteins for A0A4X1TFI3 (Sus scrofa) Explore A0A4X1TFI3 Go to UniProtKB: A0A4X1TFI3
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UniProt Group	A0A4X1TFI3
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial	K [auth L]	125	Sus scrofa	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for G8IFA6 (Sus scrofa) Explore G8IFA6 Go to UniProtKB: G8IFA6
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UniProt Group	G8IFA6
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	L [auth M]	690	Sus scrofa	Mutation(s): 0 Gene Names: NDUFS1
UniProt
Find proteins for F1SHD7 (Sus scrofa) Explore F1SHD7 Go to UniProtKB: F1SHD7
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UniProt Group	F1SHD7
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	M [auth N]	144	Sus scrofa	Mutation(s): 0 Gene Names: NDUFA12 Membrane Entity: Yes
UniProt
Find proteins for F1SQP4 (Sus scrofa) Explore F1SQP4 Go to UniProtKB: F1SQP4
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UniProt Group	F1SQP4
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	N [auth O]	217	Sus scrofa	Mutation(s): 0 Gene Names: NDUFV2
UniProt
Find proteins for A0A287BG40 (Sus scrofa) Explore A0A287BG40 Go to UniProtKB: A0A287BG40
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UniProt Group	A0A287BG40
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
Complex I-30kD	O [auth P]	208	Sus scrofa	Mutation(s): 0 Gene Names: NDUFS3
UniProt
Find proteins for A0A286ZNN4 (Sus scrofa) Explore A0A286ZNN4 Go to UniProtKB: A0A286ZNN4
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UniProt Group	A0A286ZNN4
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
Complex I-49kD	P [auth Q]	430	Sus scrofa	Mutation(s): 0
UniProt
Find proteins for A0A480JYS1 (Sus scrofa) Explore A0A480JYS1 Go to UniProtKB: A0A480JYS1
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UniProt Group	A0A480JYS1
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1	Q [auth S]	70	Sus scrofa	Mutation(s): 0 Gene Names: NDUFA1 Membrane Entity: Yes
UniProt
Find proteins for K7GR43 (Sus scrofa) Explore K7GR43 Go to UniProtKB: K7GR43
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UniProt Group	K7GR43
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial	R [auth T]	96	Sus scrofa	Mutation(s): 0 Gene Names: NDUFS6 Membrane Entity: Yes
UniProt
Find proteins for F1S031 (Sus scrofa) Explore F1S031 Go to UniProtKB: F1S031
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UniProt Group	F1S031
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3	S [auth U]	83	Sus scrofa	Mutation(s): 0 Gene Names: NDUFA3 Membrane Entity: Yes
UniProt
Find proteins for A0A4X1VQ42 (Sus scrofa) Explore A0A4X1VQ42 Go to UniProtKB: A0A4X1VQ42
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UniProt Group	A0A4X1VQ42
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11	T [auth V]	140	Sus scrofa	Mutation(s): 0 Gene Names: NDUFA11 Membrane Entity: Yes
UniProt
Find proteins for I3LGM4 (Sus scrofa) Explore I3LGM4 Go to UniProtKB: I3LGM4
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UniProt Group	I3LGM4
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
Complex I-B16.6	U [auth W]	142	Sus scrofa	Mutation(s): 0 Gene Names: NDUFA13 Membrane Entity: Yes
UniProt
Find proteins for F1S6Q1 (Sus scrofa) Explore F1S6Q1 Go to UniProtKB: F1S6Q1
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UniProt Group	F1S6Q1
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
Complex I-AGGG	W [auth Y]	70	Sus scrofa	Mutation(s): 0 Gene Names: NDUFB2 Membrane Entity: Yes
UniProt
Find proteins for A0A4X1V766 (Sus scrofa) Explore A0A4X1V766 Go to UniProtKB: A0A4X1V766
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UniProt Group	A0A4X1V766
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
Complex I-B12	X [auth Z]	84	Sus scrofa	Mutation(s): 0 Gene Names: NDUFB3 Membrane Entity: Yes
UniProt
Find proteins for A0A287AS93 (Sus scrofa) Explore A0A287AS93 Go to UniProtKB: A0A287AS93
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UniProt Group	A0A287AS93
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
Complex I-SGDH	Y [auth a]	140	Sus scrofa	Mutation(s): 0 Gene Names: NDUFB5 Membrane Entity: Yes
UniProt
Find proteins for F1SGC6 (Sus scrofa) Explore F1SGC6 Go to UniProtKB: F1SGC6
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UniProt Group	F1SGC6
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
Complex I-B17	Z [auth b]	126	Sus scrofa	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for Q2EN80 (Sus scrofa) Explore Q2EN80 Go to UniProtKB: Q2EN80
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UniProt Group	Q2EN80
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial	AA [auth c]	156	Sus scrofa	Mutation(s): 0 Gene Names: NDUFB8 Membrane Entity: Yes
UniProt
Find proteins for F1RWL7 (Sus scrofa) Explore F1RWL7 Go to UniProtKB: F1RWL7
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UniProt Group	F1RWL7
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	BA [auth d]	175	Sus scrofa	Mutation(s): 0 Gene Names: NDUFB10 Membrane Entity: Yes
UniProt
Find proteins for A0A4X1VYV0 (Sus scrofa) Explore A0A4X1VYV0 Go to UniProtKB: A0A4X1VYV0
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UniProt Group	A0A4X1VYV0
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial	CA [auth e]	107	Sus scrofa	Mutation(s): 0
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial	DA [auth f]	49	Sus scrofa	Mutation(s): 0 Gene Names: NDUFC1 Membrane Entity: Yes
UniProt
Find proteins for A1XQS6 (Sus scrofa) Explore A1XQS6 Go to UniProtKB: A1XQS6
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UniProt Group	A1XQS6
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 subunit C2	EA [auth g]	122	Sus scrofa	Mutation(s): 0 Gene Names: NDUFC2 Membrane Entity: Yes
UniProt
Find proteins for A0A480JRW3 (Sus scrofa) Explore A0A480JRW3 Go to UniProtKB: A0A480JRW3
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UniProt Group	A0A480JRW3
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5	FA [auth h]	105	Sus scrofa	Mutation(s): 0 Gene Names: NDUFS5 Membrane Entity: Yes
UniProt
Find proteins for F1SV23 (Sus scrofa) Explore F1SV23 Go to UniProtKB: F1SV23
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UniProt Group	F1SV23
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 2	GA [auth i]	347	Sus scrofa	Mutation(s): 0 Gene Names: MT-ND2, MTND2, NADH2, ND2 EC: 7.1.1.2 Membrane Entity: Yes
UniProt
Find proteins for O79875 (Sus scrofa) Explore O79875 Go to UniProtKB: O79875
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UniProt Group	O79875
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 3	HA [auth j]	115	Sus scrofa	Mutation(s): 0 Gene Names: MT-ND3, MTND3, NADH3, ND3 EC: 7.1.1.2 Membrane Entity: Yes
UniProt
Find proteins for O79880 (Sus scrofa) Explore O79880 Go to UniProtKB: O79880
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UniProt Group	O79880
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 4L	IA [auth k]	98	Sus scrofa	Mutation(s): 0 Gene Names: MT-ND4L, MTND4L, NADH4L, ND4L EC: 7.1.1.2 Membrane Entity: Yes
UniProt
Find proteins for P56632 (Sus scrofa) Explore P56632 Go to UniProtKB: P56632
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UniProt Group	P56632
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 5	JA [auth l]	603	Sus scrofa	Mutation(s): 0 Gene Names: NADH5, ND5 EC: 7.1.1.2 Membrane Entity: Yes
UniProt
Find proteins for Q71K68 (Sus scrofa) Explore Q71K68 Go to UniProtKB: Q71K68
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UniProt Group	Q71K68
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Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 6	KA [auth m]	175	Sus scrofa	Mutation(s): 0 Gene Names: MT-ND6, MTND6, NADH6, ND6 EC: 7.1.1.2 Membrane Entity: Yes
UniProt
Find proteins for O79882 (Sus scrofa) Explore O79882 Go to UniProtKB: O79882
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UniProt Group	O79882
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Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1	LA [auth n]	56	Sus scrofa	Mutation(s): 0 Gene Names: NDUFB1 Membrane Entity: Yes
UniProt
Find proteins for F1SD73 (Sus scrofa) Explore F1SD73 Go to UniProtKB: F1SD73
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UniProt Group	F1SD73
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Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4	MA [auth o]	128	Sus scrofa	Mutation(s): 0 Gene Names: NDUFB4 Membrane Entity: Yes
UniProt
Find proteins for A0A4X1T6M0 (Sus scrofa) Explore A0A4X1T6M0 Go to UniProtKB: A0A4X1T6M0
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UniProt Group	A0A4X1T6M0
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Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	NA [auth p]	178	Sus scrofa	Mutation(s): 0 Gene Names: NDUFB9 Membrane Entity: Yes
UniProt
Find proteins for A0A4X1T0A8 (Sus scrofa) Explore A0A4X1T0A8 Go to UniProtKB: A0A4X1T0A8
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UniProt Group	A0A4X1T0A8
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 4	OA [auth r]	459	Sus scrofa	Mutation(s): 0 Gene Names: NADH4 EC: 7.1.1.2 Membrane Entity: Yes
UniProt
Find proteins for Q7IIB7 (Sus scrofa) Explore Q7IIB7 Go to UniProtKB: Q7IIB7
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UniProt Group	Q7IIB7
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 1	PA [auth s]	318	Sus scrofa	Mutation(s): 0 Gene Names: MT-ND1, MTND1, NADH1, ND1 EC: 7.1.1.2 Membrane Entity: Yes
UniProt
Find proteins for O79874 (Sus scrofa) Explore O79874 Go to UniProtKB: O79874
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UniProt Group	O79874
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8	QA [auth u]	171	Sus scrofa	Mutation(s): 0 Gene Names: NDUFA8
UniProt
Find proteins for F1SLR1 (Sus scrofa) Explore F1SLR1 Go to UniProtKB: F1SLR1
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UniProt Group	F1SLR1
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
Complex I-B18	RA [auth v]	124	Sus scrofa	Mutation(s): 0 Gene Names: NDUFB7 Membrane Entity: Yes
UniProt
Find proteins for F1SCH1 (Sus scrofa) Explore F1SCH1 Go to UniProtKB: F1SCH1
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UniProt Group	F1SCH1
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	SA [auth w]	320	Sus scrofa	Mutation(s): 0 Gene Names: NDUFA10
UniProt
Find proteins for F1SIS9 (Sus scrofa) Explore F1SIS9 Go to UniProtKB: F1SIS9
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UniProt Group	F1SIS9
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Reference Sequence

Small Molecules

Ligands 13 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CDL (Subject of Investigation/LOI) Query on CDL Download Ideal Coordinates CCD File SDF format, chain DB [auth I] SDF format, chain NB [auth a] SDF format, chain PB [auth i] SDF format, chain SB [auth l] SDF format, chain TB [auth l] SDF format, chain YB [auth r] MOL2 format, chain DB [auth I] MOL2 format, chain NB [auth a] MOL2 format, chain PB [auth i] MOL2 format, chain SB [auth l] MOL2 format, chain TB [auth l] MOL2 format, chain YB [auth r]	DB [auth I], NB [auth a], PB [auth i], SB [auth l], TB [auth l], DB [auth I], NB [auth a], PB [auth i], SB [auth l], TB [auth l], YB [auth r]	CARDIOLIPIN C₈₁ H₁₅₆ O₁₇ P₂ XVTUQDWPJJBEHJ-KZCWQMDCSA-L		Ligand Interaction
UQ (Subject of Investigation/LOI) Query on UQ Download Ideal Coordinates CCD File SDF format, chain ZB [auth s] MOL2 format, chain ZB [auth s]	ZB [auth s]	Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer C₅₉ H₉₀ O₄ ACTIUHUUMQJHFO-RECDIHICSA-N		Ligand Interaction
PLX (Subject of Investigation/LOI) Query on PLX Download Ideal Coordinates CCD File SDF format, chain BB [auth C] SDF format, chain OB [auth g] SDF format, chain RB [auth j] SDF format, chain XB [auth r] MOL2 format, chain BB [auth C] MOL2 format, chain OB [auth g] MOL2 format, chain RB [auth j] MOL2 format, chain XB [auth r]	BB [auth C], OB [auth g], RB [auth j], XB [auth r]	(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL C₄₂ H₈₉ N O₈ P YVNJQRQLQPWVSQ-IWSHAHEXSA-O		Ligand Interaction
NDP (Subject of Investigation/LOI) Query on NDP Download Ideal Coordinates CCD File SDF format, chain EB [auth J] MOL2 format, chain EB [auth J]	EB [auth J]	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₃₀ N₇ O₁₇ P₃ ACFIXJIJDZMPPO-NNYOXOHSSA-N		Ligand Interaction
PEE (Subject of Investigation/LOI) Query on PEE Download Ideal Coordinates CCD File SDF format, chain YA [auth B] SDF format, chain AB [auth C] SDF format, chain LB [auth U] SDF format, chain QB [auth i] SDF format, chain UB [auth l] SDF format, chain VB [auth m] SDF format, chain WB [auth r] MOL2 format, chain YA [auth B] MOL2 format, chain AB [auth C] MOL2 format, chain LB [auth U] MOL2 format, chain QB [auth i] MOL2 format, chain UB [auth l] MOL2 format, chain VB [auth m] MOL2 format, chain WB [auth r]	AB [auth C], LB [auth U], QB [auth i], UB [auth l], VB [auth m], AB [auth C], LB [auth U], QB [auth i], UB [auth l], VB [auth m], WB [auth r], YA [auth B]	1,2-dioleoyl-sn-glycero-3-phosphoethanolamine C₄₁ H₇₈ N O₈ P MWRBNPKJOOWZPW-NYVOMTAGSA-N		Ligand Interaction
NAI (Subject of Investigation/LOI) Query on NAI Download Ideal Coordinates CCD File SDF format, chain VA [auth A] MOL2 format, chain VA [auth A]	VA [auth A]	1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE C₂₁ H₂₉ N₇ O₁₄ P₂ BOPGDPNILDQYTO-NNYOXOHSSA-N		Ligand Interaction
8Q1 (Subject of Investigation/LOI) Query on 8Q1 Download Ideal Coordinates CCD File SDF format, chain CB [auth G] SDF format, chain MB [auth X] MOL2 format, chain CB [auth G] MOL2 format, chain MB [auth X]	CB [auth G], MB [auth X]	S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate C₂₃ H₄₅ N₂ O₈ P S MVHUOSAYFQKAMT-NRFANRHFSA-N		Ligand Interaction
FMN (Subject of Investigation/LOI) Query on FMN Download Ideal Coordinates CCD File SDF format, chain UA [auth A] MOL2 format, chain UA [auth A]	UA [auth A]	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Ligand Interaction
ADP (Subject of Investigation/LOI) Query on ADP Download Ideal Coordinates CCD File SDF format, chain AC [auth w] MOL2 format, chain AC [auth w]	AC [auth w]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Ligand Interaction
SF4 (Subject of Investigation/LOI) Query on SF4 Download Ideal Coordinates CCD File SDF format, chain FB [auth M] SDF format, chain GB [auth M] SDF format, chain TA [auth A] SDF format, chain WA [auth B] SDF format, chain XA [auth B] SDF format, chain ZA [auth C] MOL2 format, chain FB [auth M] MOL2 format, chain GB [auth M] MOL2 format, chain TA [auth A] MOL2 format, chain WA [auth B] MOL2 format, chain XA [auth B] MOL2 format, chain ZA [auth C]	FB [auth M], GB [auth M], TA [auth A], WA [auth B], XA [auth B], FB [auth M], GB [auth M], TA [auth A], WA [auth B], XA [auth B], ZA [auth C]	IRON/SULFUR CLUSTER Fe₄ S₄ LJBDFODJNLIPKO-VKOJMFJBAC		Ligand Interaction
FES (Subject of Investigation/LOI) Query on FES Download Ideal Coordinates CCD File SDF format, chain HB [auth M] SDF format, chain JB [auth O] MOL2 format, chain HB [auth M] MOL2 format, chain JB [auth O]	HB [auth M], JB [auth O]	FE2/S2 (INORGANIC) CLUSTER Fe₂ S₂ NIXDOXVAJZFRNF-UHFFFAOYSA-N		Ligand Interaction
ZN (Subject of Investigation/LOI) Query on ZN Download Ideal Coordinates CCD File SDF format, chain KB [auth T] MOL2 format, chain KB [auth T]	KB [auth T]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain IB [auth M] MOL2 format, chain IB [auth M]	IB [auth M]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
2MR Query on 2MR	P [auth Q]	L-PEPTIDE LINKING	C₈ H₁₈ N₄ O₂		ARG

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.00 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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Entry History & Funding Information

Deposition Data

Released Date: 2023-01-25

Deposition Author(s):

Gu, J.

Yang, M.

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	2017YFA0504600 and 2016YFA0501100
National Natural Science Foundation of China (NSFC)	China	31625008
National Natural Science Foundation of China (NSFC)	China	32030056, 21532004 and 31570733 and 31800620

Revision History (Full details and data files)

Version 1.0: 2023-01-25
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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7W4N

Deactive state CI from Q1-NADH dataset, Subclass 5

The coupling mechanism of mammalian mitochondrial complex I

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