RCSB PDB Help

Structure Prediction

AlphaFold2	Open source code for AlphaFold
RoseTTAFold	A software tool that uses deep learning to quickly and accurately predict protein structures based on limited information.
OpenFold	Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
OmegaFold	OmegaFold Release Code
HelixFold	An Efficient and Improved Implementation of AlphaFold 2 using PaddlePaddle
HelixFold-single	A single sequence language-model-based prediction network
ESMFold	Evolutionary Scale Modeling (esm): Pretrained language models for proteins

ColabFold	AlphaFold2 using MMseqs2
I-TASSER	(Iterative Threading ASSEmbly Refinement) is a hierarchical approach to protein structure prediction and structure-based function annotation
COSMIC2	Online resource for freely-available structure prediction using AlphaFold2, ColabFold, and ESMFold at the San Diego Supercomputer Center.

AlphaFold Protein Structure Database	AlphaFold is an AI system developed by DeepMind that predicts a protein’s 3D structure from its amino acid sequence
ModelArchive	Repository for theoretical models of macromolecular structures
ModBase	A database of comparative protein structure models
SWISS-MODEL Repository	A database of annotated protein structure homology models