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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kulomaa, M.S."

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Search Summary

This query matches 20 Structures.

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Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Gallus gallus (14)
	Bradyrhizobium japonicum (2)
	Xenopus tropicalis (2)
	Danio rerio (1)
	Streptomyces avidinii (1)

Taxonomy

	Eukaryota (17)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (19)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (12)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (10)
	2010 - 2014 (6)
	2015 - 2019 (2)

Symmetry Type

	Dihedral (19)
	Cyclic (1)

SCOP Classification

	All beta proteins (18)
	Artifacts (5)

AllSelected

1 to 20 of 20 Structures

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1NQM \| pdb_00001nqm	Download File View File

Structure of Savm-W120K, streptavidin mutant

Pazy, Y., Eisenberg-Domovich, Y., Laitinen, O.H., Kulomaa, M.S., Bayer, E.A., Wilchek, M., Livnah, O.

(2003) J Bacteriol 185: 4050-4056

Released	2003-07-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BTN

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1NQN \| pdb_00001nqn	Download File View File

Structure of Avm-W110K (W110K mutant of avidin)

Pazy, Y., Eisenberg-Domovich, Y., Laitinen, O.H., Kulomaa, M.S., Bayer, E.A., Wilchek, M., Livnah, O.

(2003) J Bacteriol 185: 4050-4056

Released	2003-07-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	Avidin (protein)

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1WBI \| pdb_00001wbi	Download File View File

AVR2

Airenne, T.T., Hytonen, V.P., Maatta, J.H., Kidron, H., Halling, K.K., Horha, J., Kulomaa, T., Nyholm, T.K.M., Johnson, M.S., Salminen, T.A., Kulomaa, M.S.

(2005) BMC Biotechnol 5: 28

Released	2005-10-12
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Gallus gallus
Macromolecule	AVIDIN-RELATED PROTEIN 2 (protein)
Unique Ligands	BTN, GOL, SO4

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1Y52 \| pdb_00001y52	Download File View File

structure of insect cell (Baculovirus) expressed AVR4 (C122S)-biotin complex

Eisenberg-Domovich, Y., Hytonen, V.P., Wilchek, M., Bayer, E.A., Kulomaa, M.S., Livnah, O.

(2005) Acta Crystallogr D Biol Crystallogr 61: 528-538

Released	2005-05-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Avidin-related protein 4/5 (protein)
Unique Ligands	BTN, NAG

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1Y53 \| pdb_00001y53	Download File View File

Crystal structure of bacterial expressed avidin related protein 4 (AVR4) C122S

Eisenberg-Domovich, Y., Hytonen, V.P., Wilchek, M., Bayer, E.A., Kulomaa, M.S., Livnah, O.

(2005) Acta Crystallogr D Biol Crystallogr 61: 528-538

Released	2005-05-24
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Gallus gallus
Macromolecule	Avidin-related protein 4/5 (protein)
Unique Ligands	FMT

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1Y55 \| pdb_00001y55	Download File View File

Crystal structure of the C122S mutant of E. Coli expressed avidin related protein 4 (AVR4)-biotin complex

Eisenberg-Domovich, Y., Hytonen, V.P., Wilchek, M., Bayer, E.A., Kulomaa, M.S., Livnah, O.

(2005) Acta Crystallogr D Biol Crystallogr 61: 528-538

Released	2005-05-24
Method	X-RAY DIFFRACTION 1 Å
Organisms	Gallus gallus
Macromolecule	Avidin-related protein 4/5 (protein)
Unique Ligands	BTN, FMT

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2C1Q \| pdb_00002c1q	Download File View File

X-ray structure of biotin binding protein from chicken

Hytonen, V.P., Niskanen, E.A., Maatta, J.A.E., Huuskonen, J., Helttunen, K.J., Halling, K.K., Slotte, J.P., Nordlund, H.R., Rissanen, K., Johnson, M.S., Salminen, T.A., Kulomaa, M.S., Laitinen, O.H., Airenne, T.T.

(2007) BMC Struct Biol 7: 8

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	BIOTIN BINDING PROTEIN A (protein)
Unique Ligands	BTN, GOL

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2C1S \| pdb_00002c1s	Download File View File

X-ray structure of biotin binding protein from chicken

(2007) BMC Struct Biol 7: 8

Released	2007-02-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Gallus gallus
Macromolecule	BIOTIN BINDING PROTEIN A (protein)
Unique Ligands	BSO

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2C4I \| pdb_00002c4i	Download File View File

Crystal structure of engineered avidin

Hytonen, V.P., Horha, J., Airenne, T.T., Niskanen, E.A., Helttunen, K., Johnson, M.S., Salminen, T.A., Kulomaa, M.S., Nordlund, H.R.

(2006) J Mol Biology 359: 1352

Released	2006-07-05
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Gallus gallus
Macromolecule	AVIDIN (protein)
Unique Ligands	BTN, SO4

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2JGS \| pdb_00002jgs	Download File View File

Circular permutant of avidin

Maatta, J.A.E., Hytonen, V.P., Airenne, T.T., Niskanen, E., Johnson, M.S., Kulomaa, M.S., Nordlund, H.R.

(2008) Chembiochem 9: 1124

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	CIRCULAR PERMUTANT OF AVIDIN (protein)
Unique Ligands	BTN

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2MF6 \| pdb_00002mf6	Download File View File

Solution NMR structure of Chimeric Avidin, ChiAVD(I117Y), in the biotin bound form

Tossavainen, H., Kukkurainen, S., Maatta, J.A.E., Pihlajamaa, T., Hytonen, V.P., Kulomaa, M.S., Permi, P.

(2014) PLoS One 9: e100564-e100564

Released	2014-08-06
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	Avidin, Avidin-related protein 4/5 (protein)

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2UYW \| pdb_00002uyw	Download File View File

Crystal structure of Xenavidin

Helppolainen, S.H., Maatta, J.A.E., Airenne, T.T., Johnson, M.S., Kulomaa, M.S., Nordlund, H.R.

(2009) BMC Struct Biol 9: 63

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Xenopus tropicalis
Macromolecule	XENAVIDIN (protein)
Unique Ligands	BTN, FMT

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2UZ2 \| pdb_00002uz2	Download File View File

Crystal structure of Xenavidin

Helppolainen, S.H., Maatta, J.A.E., Airenne, T.T., Johnson, M.S., Kulomaa, M.S., Nordlund, H.R.

(2009) BMC Struct Biol 9: 63

Released	2008-06-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Xenopus tropicalis
Macromolecule	XENAVIDIN (protein)
Unique Ligands	ACT, BTN

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2Y32 \| pdb_00002y32	Download File View File

Crystal structure of bradavidin

Leppiniemi, J., Gronroos, T., Johnson, M.S., Kulomaa, M.S., Hytonen, V.P., Airenne, T.T.

(2012) PLoS One 7: 35962

Released	2011-12-28
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	BLR5658 PROTEIN (protein)

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3MM0 \| pdb_00003mm0	Download File View File

Crystal structure of chimeric avidin

Livnah, O., Eisenberg-Domovich, Y., Maatta, J.A.E., Kulomaa, M.S., Hytonen, V.P., Nordlund, H.R.

(2011) Biotechnol Bioeng 108: 481-490

Released	2010-10-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Gallus gallus
Macromolecule	Avidin, Avidin-related protein 4/5 (protein)

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4BBO \| pdb_00004bbo	Download File View File

Crystal structure of core-bradavidin

Airenne, T.T., Johnson, M.S., Maatta, J.A.E., Hytonen, V.H., Kulomaa, M.S.

To be published

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	BLR5658 PROTEIN (protein)
Unique Ligands	ACT, BTN, GOL

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4BCS \| pdb_00004bcs	Download File View File

Crystal structure of an avidin mutant

Airenne, T.T., Niederhauser, B., Hytonen, V.P., Kulomaa, M.S., Johnson, M.S.

(2014) PLoS One 9: 92058

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	CHIMERIC AVIDIN (protein)
Unique Ligands	ACT, BTN, PEG, PO4

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4BJ8 \| pdb_00004bj8	Download File View File

Zebavidin

Airenne, T.T., Parthiban, M., Niederhauser, B., Zmurko, J., Kulomaa, M.S., Hytonen, V.P., Johnson, M.S.

(2013) PLoS One 8: 77207

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Danio rerio
Macromolecule	ZEBAVIDIN (protein)
Unique Ligands	BTN, GOL

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4U46 \| pdb_00004u46	Download File View File

Crystal structure of an avidin mutant

Agrawal, N., Lehtonen, S., Kahkonen, N., Riihimaki, T., Hytonen, V.P., Kulomaa, M.S., Johnson, M.S., Airenne, T.T.

(2016) ACS Chem Biol 11: 211-221

Released	2015-08-05
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Gallus gallus
Macromolecule	Avidin (protein)
Unique Ligands	CL

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5LUR \| pdb_00005lur	Download File View File

An avidin mutant

Agrawal, N., Lehtonen, S.I., Riihimaki, T.A., Kulomaa, M.S., Hytonen, V.P., Johnson, M.S., Airenne, T.T.

To be published

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Gallus gallus
Macromolecule	Avidin (protein)
Unique Ligands	CL, STR

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1NQM | pdb_00001nqm

Structure of Savm-W120K, streptavidin mutant

1NQN | pdb_00001nqn

Structure of Avm-W110K (W110K mutant of avidin)

1WBI | pdb_00001wbi

AVR2

1Y52 | pdb_00001y52

structure of insect cell (Baculovirus) expressed AVR4 (C122S)-biotin complex

1Y53 | pdb_00001y53

Crystal structure of bacterial expressed avidin related protein 4 (AVR4) C122S

1Y55 | pdb_00001y55

Crystal structure of the C122S mutant of E. Coli expressed avidin related protein 4 (AVR4)-biotin complex

2C1Q | pdb_00002c1q

X-ray structure of biotin binding protein from chicken

2C1S | pdb_00002c1s

X-ray structure of biotin binding protein from chicken

2C4I | pdb_00002c4i

Crystal structure of engineered avidin

2JGS | pdb_00002jgs

Circular permutant of avidin

2MF6 | pdb_00002mf6

Solution NMR structure of Chimeric Avidin, ChiAVD(I117Y), in the biotin bound form

2UYW | pdb_00002uyw

Crystal structure of Xenavidin

2UZ2 | pdb_00002uz2

Crystal structure of Xenavidin

2Y32 | pdb_00002y32

Crystal structure of bradavidin

3MM0 | pdb_00003mm0

Crystal structure of chimeric avidin

4BBO | pdb_00004bbo

Crystal structure of core-bradavidin

4BCS | pdb_00004bcs

Crystal structure of an avidin mutant

4BJ8 | pdb_00004bj8

Zebavidin

4U46 | pdb_00004u46

Crystal structure of an avidin mutant

5LUR | pdb_00005lur

An avidin mutant

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1NQM | pdb_00001nqm

1NQN | pdb_00001nqn

1WBI | pdb_00001wbi

1Y52 | pdb_00001y52

1Y53 | pdb_00001y53

1Y55 | pdb_00001y55

2C1Q | pdb_00002c1q

2C1S | pdb_00002c1s

2C4I | pdb_00002c4i

2JGS | pdb_00002jgs

2MF6 | pdb_00002mf6

2UYW | pdb_00002uyw

2UZ2 | pdb_00002uz2

2Y32 | pdb_00002y32

3MM0 | pdb_00003mm0

4BBO | pdb_00004bbo

4BCS | pdb_00004bcs

4BJ8 | pdb_00004bj8

4U46 | pdb_00004u46

5LUR | pdb_00005lur