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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Thunnissen, A.M.W.H."

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Search Summary

This query matches 90 Structures.

Refinements

Structure Determination Methodology

experimental (90)

Scientific Name of Source Organism

	Lactococcus cremoris subsp. cremoris MG1363 (14)
	Pseudomonas putida (9)
	Lactococcus cremoris (6)
	Pseudomonas sp. (6)
	Sorangium cellulosum So ce56 (6)
	Escherichia coli (5)
	Priestia megaterium DSM 319 (5)
	Pseudomonas aeruginosa PAO1 (5)
	Escherichia coli K-12 (3)
	Pyrococcus horikoshii (3)

More...

Taxonomy

	Bacteria (82)
	Archaea (6)
	Eukaryota (2)

Experimental Method

	X-RAY DIFFRACTION (89)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (90)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (36)
	2.0 - 2.5 (34)
	2.5 - 3.0 (10)
	3.0 - 3.5 (3)
	> 4.5 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (1)
	2005 - 2009 (4)
	2010 - 2014 (12)
	2015 - 2019 (33)
	2020 - 2024 (25)
	2025 - 2029 (13)

Enzyme Classification Name

	Oxidoreductases (14)
	Lyases (17)
	Hydrolases (8)
	Isomerases (7)
	Ligases (2)
	Transferases (6)
	Translocases (1)

Membrane Protein Annotation

	OPM (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (37)
	Cyclic (39)
	Dihedral (15)

SCOP Classification

	Alpha and beta proteins (a+b) (10)
	All alpha proteins (13)
	Alpha and beta proteins (a/b) (7)
	Artifacts (9)
	All beta proteins (5)

AllSelected

1 to 25 of 90 Structures

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1CKP \| pdb_00001ckp	Download File View File

HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE INHIBITOR PURVALANOL B

Gray, N.S., Thunnissen, A.M.W.H., Schultz, P.G., Kim, S.H.

(1998) Science 281: 533-538

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (CYCLIN-DEPENDENT PROTEIN KINASE 2) (protein)
Unique Ligands	EDO, PVB

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1OXX \| pdb_00001oxx	Download File View File

Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus

Verdon, G., Albers, S.-V., van Oosterwijk, N., Dijkstra, B.W., Driessen, A.J.M., Thunnissen, A.M.W.H.

(2003) J Mol Biology 334: 255-267

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Saccharolobus solfataricus
Macromolecule	ABC transporter, ATP binding protein (protein)
Unique Ligands	IOD

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1SLY \| pdb_00001sly	Download File View File

COMPLEX OF THE 70-KDA SOLUBLE LYTIC TRANSGLYCOSYLASE WITH BULGECIN A

Thunnissen, A.M.W.H., Kalk, K.H., Rozeboom, H.J., Dijkstra, B.W.

(1995) Biochemistry 34: 12729-12737

Released	1996-08-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	70-KDA SOLUBLE LYTIC TRANSGLYCOSYLASE (protein)
Unique Ligands	BLG

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2AE0 \| pdb_00002ae0	Download File View File

Crystal structure of MltA from Escherichia coli reveals a unique lytic transglycosylase fold

Van Straaten, K.E., Dijkstra, B.W., Vollmer, W., Thunnissen, A.M.W.H.

(2005) J Mol Biology 352: 1068-1080

Released	2005-10-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Membrane-bound lytic murein transglycosylase A (protein)
Unique Ligands	ACY, EDO

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2PI8 \| pdb_00002pi8	Download File View File

Crystal structure of E. coli MltA with bound chitohexaose

van Straaten, K.E., Barends, T.R.M., Dijkstra, B.W., Thunnissen, A.M.W.H.

(2007) J Biological Chem 282: 21197-21205

Released	2007-05-08
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli K-12
Macromolecule	Membrane-bound lytic murein transglycosylase A (protein)
Unique Ligands	PO4
Unique branched monosaccharides	NAG

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2PIC \| pdb_00002pic	Download File View File

E. coli lytic transglycosylase MltA-D308A in apo-2 form

van Straaten, K.E., Dijkstra, B.W., Thunnissen, A.M.W.H.

(2007) J Biological Chem 282: 21197-21205

Released	2007-05-08
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli K-12
Macromolecule	Membrane-bound lytic murein transglycosylase A (protein)

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2PJJ \| pdb_00002pjj	Download File View File

E. coli lytic transglycosylase MltA-D308A in apo-1 form

van Straaten, K.E., Dijkstra, B.W., Thunnissen, A.M.W.H.

(2007) J Biological Chem 282: 21197-21205

Released	2007-05-08
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Escherichia coli K-12
Macromolecule	Membrane-bound lytic murein transglycosylase A (protein)

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2XCZ \| pdb_00002xcz	Download File View File

Crystal Structure of macrophage migration inhibitory factor homologue from Prochlorococcus marinus

Wasiel, A.A., Rozeboom, H.J., Hauke, D., Baas, B.J., Zandvoort, E., Quax, W.J., Thunnissen, A.M.W.H., Poelarends, G.J.

(2010) Biochemistry 49: 7572

Released	2010-09-01
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Prochlorococcus marinus str. MIT 9313
Macromolecule	POSSIBLE ATLS1-LIKE LIGHT-INDUCIBLE PROTEIN (protein)
Unique Ligands	PEG

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3H8E \| pdb_00003h8e	Download File View File

Low pH native structure of leucine aminopeptidase from Pseudomonas putida

Kale, A., Dijkstra, B.W., Sonke, T., Thunnissen, A.M.W.H.

(2010) J Mol Biology 398: 703-714

Released	2010-04-14
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Pseudomonas putida
Macromolecule	Cytosol aminopeptidase (protein)

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3H8F \| pdb_00003h8f	Download File View File

High pH native structure of leucine aminopeptidase from Pseudomonas putida

Kale, A., Dijkstra, B.W., Sonke, T., Thunnissen, A.M.W.H.

(2010) J Mol Biology 398: 703-714

Released	2010-04-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudomonas putida
Macromolecule	Cytosol aminopeptidase (protein)
Unique Ligands	BCT, K, MN, ZN

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3H8G \| pdb_00003h8g	Download File View File

Bestatin complex structure of leucine aminopeptidase from Pseudomonas putida

Kale, A., Dijkstra, B.W., Sonke, T., Thunnissen, A.M.W.H.

(2010) J Mol Biology 398: 703-714

Released	2010-04-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudomonas putida
Macromolecule	Cytosol aminopeptidase (protein)
Unique Ligands	BCT, BES, K, MN, ZN

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3L6G \| pdb_00003l6g	Download File View File

Crystal structure of lactococcal OpuAC in its open conformation

Berntsson, R.P.A., Wolters, J.C., Gul, N., Karasawa, A., Thunnissen, A.M.W.H., Slotboom, D.J., Poolman, B.

(2010) PLoS One 5: e10361-e10361

Released	2010-05-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lactococcus lactis
Macromolecule	Betaine ABC transporter permease and substrate binding protein (protein)
Unique Ligands	B3P

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3L6H \| pdb_00003l6h	Download File View File

Crystal structure of lactococcal OpuAC in its closed-liganded conformation complexed with glycine betaine

Berntsson, R.P.A., Wolters, J.C., Gul, N., Karasawa, A., Thunnissen, A.M.W.H., Slotboom, D.J., Poolman, B.

(2010) PLoS One 5: e10361-e10361

Released	2010-05-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lactococcus lactis
Macromolecule	Betaine ABC transporter permease and substrate binding protein (protein)
Unique Ligands	BET, CL

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3ZVH \| pdb_00003zvh	Download File View File

Methylaspartate ammonia lyase from Clostridium tetanomorphum mutant Q73A

Raj, H., Szymanski, W., de Villiers, J., Rozeboom, H.J., Veetil, V.P., Reis, C.R., de Villiers, M., de Wildeman, S., Dekker, F.J., Quax, W.J., Thunnissen, A.M.W.H., Feringa, B.L., Janssen, D.B., Poelarends, G.J.

(2012) Nat Chem 4: 478

Released	2012-05-02
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Clostridium tetanomorphum
Macromolecule	METHYLASPARTATE AMMONIA-LYASE (protein)
Unique Ligands	CL, GOL, MG

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3ZVI \| pdb_00003zvi	Download File View File

Methylaspartate ammonia lyase from Clostridium tetanomorphum mutant L384A

(2012) Nat Chem 4: 478

Released	2012-05-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium tetanomorphum
Macromolecule	METHYLASPARTATE AMMONIA-LYASE (protein)
Unique Ligands	CL, GOL, MG, ROP

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4C3X \| pdb_00004c3x	Download File View File

Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1

Rohman, A., van Oosterwijk, N., Thunnissen, A.M.W.H., Dijkstra, B.W.

(2013) J Biological Chem 288: 35559

Released	2013-11-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rhodococcus erythropolis
Macromolecule	3-KETOSTEROID DEHYDROGENASE (protein)
Unique Ligands	CL, FAD, NA, PG4
Unique branched monosaccharides	FRU, GLC

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4C3Y \| pdb_00004c3y	Download File View File

Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1 in complex with 1,4-androstadiene-3,17- dione

Rohman, A., van Oosterwijk, N., Thunnissen, A.M.W.H., Dijkstra, B.W.

(2013) J Biological Chem 288: 35559

Released	2013-11-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rhodococcus erythropolis
Macromolecule	3-KETOSTEROID DEHYDROGENASE (protein)
Unique Ligands	ANB, FAD, NA, PG4

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4ESB \| pdb_00004esb	Download File View File

Crystal structure of PadR-like transcriptional regulator (BC4206) from Bacillus cereus strain ATCC 14579

Fibriansah, G., Kovacs, A.T., Kuipers, O.P., Thunnissen, A.M.W.H.

(2012) PLoS One 7: e48015-e48015

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus cereus ATCC 14579
Macromolecule	Transcriptional regulator, PadR family (protein)
Unique Ligands	GOL, SO4

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4ESF \| pdb_00004esf	Download File View File

Crystal structure of PadR-like transcriptional regulator (BCE3449) from Bacillus cereus strain ATCC 10987

Fibriansah, G., Kovacs, A.T., Kuipers, O.P., Thunnissen, A.M.W.H.

(2012) PLoS One 7: e48015-e48015

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus cereus ATCC 10987
Macromolecule	PadR-like transcriptional regulator (protein)

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4OWD \| pdb_00004owd	Download File View File

Crystal structure of MltF from Pseudomonas aeruginosa complexed with cysteine

Reddem, E., Thunnissen, A.M.W.H.

To be published

Released	2015-03-18
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Membrane-bound lytic murein transglycosylase F (protein)
Unique Ligands	CL, CYS

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4OXV \| pdb_00004oxv	Download File View File

Crystal structure of MltF from Pseudomonas aeruginosa complexed with valine

Reddem, E., Thunnissen, A.M.W.H.

To be published

Released	2015-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudomonas aeruginosa PADK2_CF510
Macromolecule	Membrane-bound lytic murein transglycosylase F (protein)
Unique Ligands	VAL

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4OYV \| pdb_00004oyv	Download File View File

Crystal structure of MltF from Pseudomonas aeruginosa complexed with leucine

Reddem, E., Thunnissen, A.M.W.H.

To be published

Released	2015-03-18
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Membrane-bound lytic murein transglycosylase F (protein)
Unique Ligands	CL, LEU

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4OZ9 \| pdb_00004oz9	Download File View File

Crystal structure of MltF from Pseudomonas aeruginosa complexed with isoleucine

Reddem, E., Thunnissen, A.M.W.H.

To be published

Released	2015-03-18
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Membrane-bound lytic murein transglycosylase F (protein)
Unique Ligands	ILE

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4P0G \| pdb_00004p0g	Download File View File

Crystal structure of MltF from Pseudomonas aeruginosa complexed with bulgecin and muropeptide

Redden, E., Thunnissen, A.M.W.H.

To be published

Released	2015-03-18
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Membrane-bound lytic murein transglycosylase F (protein)
Unique Ligands	BLG, CL, MG
Unique branched monosaccharides	AMU, NAG

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4P11 \| pdb_00004p11	Download File View File

Native crystal structure of MltF Pseudomonas aeruginosa

Reddem, E., Thunnissen, A.M.W.H.

To be published

Released	2015-03-18
Method	X-RAY DIFFRACTION 1.891 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Membrane-bound lytic murein transglycosylase F (protein)
Unique Ligands	CL, MG

1 to 25 of 90 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CKP | pdb_00001ckp

1OXX | pdb_00001oxx

1SLY | pdb_00001sly

2AE0 | pdb_00002ae0

2PI8 | pdb_00002pi8

2PIC | pdb_00002pic

2PJJ | pdb_00002pjj

2XCZ | pdb_00002xcz

3H8E | pdb_00003h8e

3H8F | pdb_00003h8f

3H8G | pdb_00003h8g

3L6G | pdb_00003l6g

3L6H | pdb_00003l6h

3ZVH | pdb_00003zvh

3ZVI | pdb_00003zvi

4C3X | pdb_00004c3x

4C3Y | pdb_00004c3y

4ESB | pdb_00004esb

4ESF | pdb_00004esf

4OWD | pdb_00004owd

4OXV | pdb_00004oxv

4OYV | pdb_00004oyv

4OZ9 | pdb_00004oz9

4P0G | pdb_00004p0g

4P11 | pdb_00004p11