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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Beaupre, B.A."

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Search Summary

This query matches 103 Structures.

Refinements

Structure Determination Methodology

experimental (103)

Scientific Name of Source Organism

	Homo sapiens (17)
	Mus musculus (7)
	Pseudomonas aeruginosa (7)
	Saccharomyces cerevisiae (6)
	synthetic construct (6)
	Bacillus subtilis (4)
	Saccharothrix mutabilis subsp. capreolus (4)
	unidentified (4)
	Drosophila melanogaster (3)
	Escherichia coli (3)

More...

Taxonomy

	Bacteria (50)
	Eukaryota (46)
	other sequences (6)
	unclassified sequences (5)
	Archaea (3)
	Riboviria (3)
	Duplodnaviria (2)

Experimental Method

X-RAY DIFFRACTION (103)

Polymer Entity Type

	Protein (101)
	RNA (7)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (25)
	2.0 - 2.5 (37)
	2.5 - 3.0 (22)
	3.0 - 3.5 (8)
	3.5 - 4.0 (4)
	4.0 - 4.5 (1)
	> 4.5 (3)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (8)
	2005 - 2009 (26)
	2010 - 2014 (20)
	2015 - 2019 (26)
	2020 - 2024 (19)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (15)
	Transferases (13)
	Oxidoreductases (5)
	Isomerases (4)
	Lyases (4)
	Ligases (1)

Membrane Protein Annotation

	MemProtMD (7)
	PDBTM (7)
	mpstruc (6)
	OPM (2)

Symmetry Type

	Asymmetric (46)
	Cyclic (39)
	Dihedral (27)
	Tetrahedral (4)

SCOP Classification

	All beta proteins (10)
	Alpha and beta proteins (a/b) (13)
	Alpha and beta proteins (a+b) (12)
	All alpha proteins (5)
	Membrane and cell surface proteins and peptides (3)
	Artifacts (5)
	Small proteins (3)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 103 Structures

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177L \| pdb_0000177l	Download File View File

Protein flexibility and adaptability seen in 25 crystal forms of T4 LYSOZYME

Matsumura, M., Weaver, L., Zhang, X.-J., Matthews, B.W.

(1995) J Mol Biology 250: 527-552

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)

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1C0W \| pdb_00001c0w	Download File View File

CRYSTAL STRUCTURE OF THE COBALT-ACTIVATED DIPHTHERIA TOXIN REPRESSOR-DNA COMPLEX REVEALS A METAL BINDING SH-LIKE DOMAIN

Pohl, E., Holmes, R.K., Hol, W.G.

(1999) J Mol Biology 292: 653-667

Released	2000-07-22
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein) DNA (5'-D(PAPTPTPAPGPGPTPTPAPGPCPCPTPAPCPCPCPTPAPAPT)-3') (nucleic acid) DNA (5'-D(PAPTPTPAPGPGPTPTPAPGPGPCPTPAPCPCPCPTPAPAPT)-3') (nucleic acid)
Unique Ligands	CO

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1G9U \| pdb_00001g9u	Download File View File

CRYSTAL STRUCTURE OF YOPM-LEUCINE RICH EFFECTOR PROTEIN FROM YERSINIA PESTIS

Evdokimov, A.G., Anderson, D.E., Routzahn, K.M., Waugh, D.S.

(2001) J Mol Biology 312: 807-821

Released	2001-10-10
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Yersinia pestis
Macromolecule	OUTER PROTEIN YOPM (protein)
Unique Ligands	ACT, CA, HG

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1IIP \| pdb_00001iip	Download File View File

Bovine Cyclophilin 40, Tetragonal Form

Taylor, P., Dornan, J., Carrello, A., Minchin, R.F., Ratajczak, T., Walkinshaw, M.D.

(2001) Structure 9: 431-438

Released	2001-05-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	Cyclophilin 40 (protein)
Unique Ligands	GOL

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1QHB \| pdb_00001qhb	Download File View File

VANADIUM BROMOPEROXIDASE FROM RED ALGA CORALLINA OFFICINALIS

Isupov, M.N., Dalby, A.R., Brindley, A.A., Littlechild, J.A.

(2000) J Mol Biology 299: 1035-1049

Released	2000-07-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Corallina officinalis
Macromolecule	HALOPEROXIDASE (protein)
Unique Ligands	CA, PO4

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1RP5 \| pdb_00001rp5	Download File View File

PBP2x from Streptococcus pneumoniae strain 5259 with reduced susceptibility to beta-lactam antibiotics

Pernot, L., Chesnel, L., Legouellec, A., Croize, J., Vernet, T., Dideberg, O., Dessen, A.

(2004) J Biological Chem 279: 16463-16470

Released	2004-02-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptococcus pneumoniae
Macromolecule	penicillin-binding protein 2x (protein)
Unique Ligands	SO4

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1SLQ \| pdb_00001slq	Download File View File

Crystal structure of the trimeric state of the rhesus rotavirus VP4 membrane interaction domain, VP5CT

Dormitzer, P.R., Nason, E.B., Prasad, B.V.V., Harrison, S.C.

(2004) Nature 430: 1053-1058

Released	2004-08-31
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Simian rotavirus A strain RRV
Macromolecule	VP4 (protein)

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1U8Y \| pdb_00001u8y	Download File View File

CRystal structures of Ral-GppNHp and Ral-GDP reveal two novel binding sites that are also present in Ras and Rap

Nicely, N.I., Kosak, J., de Serrano, V., Mattos, C.

(2004) Structure 12: 2025-2036

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Saguinus oedipus
Macromolecule	Ras-related protein Ral-A (protein)
Unique Ligands	GNP, MG

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1VCY \| pdb_00001vcy	Download File View File

VVA2 isoform

Lin, S.-C., Lo, Y.-C., Lin, J.-Y., Liaw, Y.-C.

(2004) J Mol Biology 343: 477-491

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Volvariella volvacea
Macromolecule	volvatoxin A2 (protein)
Unique Ligands	MLI

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1Z9J \| pdb_00001z9j	Download File View File

Photosynthetic Reaction Center from Rhodobacter sphaeroides

Thielges, M., Uyeda, G., Camara-Artigas, A., Kalman, L., Williams, J.C., Allen, J.P.

(2005) Biochemistry 44: 7389-7394

Released	2005-06-07
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, FE, MN, U10

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1Z9K \| pdb_00001z9k	Download File View File

Photosynthetic Reaction Center from Rhodobacter sphaeroides

Camara-Artigas, A., Allen, J.P.

(2005) Biochemistry 44: 7389-7394

Released	2005-06-07
Method	X-RAY DIFFRACTION 4.6 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, FE, MN, U10

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1ZWL \| pdb_00001zwl	Download File View File

Structure of WrbA from Pseudomonas aeruginosa in complex with FMN

Gorman, J., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2005) Protein Sci 14: 3004-3012

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Trp repressor binding protein WrbA (protein)
Unique Ligands	FMN

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2A0L \| pdb_00002a0l	Download File View File

Crystal structure of KvAP-33H1 Fv complex

Lee, S.Y., Lee, A., Chen, J., Mackinnon, R.

(2005) Proc Natl Acad Sci U S A 102: 15441-15446

Released	2005-11-01
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Aeropyrum pernix Mus musculus
Macromolecule	33H1 Fv fragment (protein) Voltage-gated potassium channel (protein)
Unique Ligands	K

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2ARL \| pdb_00002arl	Download File View File

The 2.0 angstroms crystal structure of a pocilloporin at pH 3.5: the structural basis for the linkage between color transition and halide binding

Wilmann, P.G., Battad, J., Beddoe, T., Olsen, S., Smith, S.C., Dove, S., Devenish, R.J., Rossjohn, J., Prescott, M.

(2006) Photochem Photobiol 82: 359-366

Released	2006-09-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Montipora efflorescens
Macromolecule	GFP-like non-fluorescent chromoprotein (protein)
Unique Ligands	ACY, CL, IOD

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2DPQ \| pdb_00002dpq	Download File View File

The crystal structures of the calcium-bound con-G and con-T(K7gamma) dimeric peptides demonstrate a novel metal-dependent helix-forming motif

Cnudde, S.E., Prorok, M., Dai, Q., Castellino, F.J., Geiger, J.H.

(2007) J Am Chem Soc 129: 1586-1593

Released	2007-04-24
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Conus geographus
Macromolecule	Conantokin-G (protein)
Unique Ligands	CA, CL

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2H0E \| pdb_00002h0e	Download File View File

Crystal Structure of PucM in the absence of substrate

Rhee, S.

(2006) Proc Natl Acad Sci U S A 103: 9790-9795

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	Transthyretin-like protein pucM (protein)
Unique Ligands	GOL

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2H0F \| pdb_00002h0f	Download File View File

Crystal Structure of PucM in the presence of 8-azaxanthine

Rhee, S.

(2006) Proc Natl Acad Sci U S A 103: 9790-9795

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bacillus subtilis
Macromolecule	Transthyretin-like protein pucM (protein)
Unique Ligands	AZA

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2H0J \| pdb_00002h0j	Download File View File

Crystal structure of PucM in the presence of 5,6-diaminouracil

Rhee, S.

(2006) Proc Natl Acad Sci U S A 103: 9790-9795

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacillus subtilis
Macromolecule	Transthyretin-like protein pucM (protein)
Unique Ligands	URN

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2PM4 \| pdb_00002pm4	Download File View File

Human alpha-defensin 1 (multiple Arg->Lys mutant)

Lubkowski, J., Pazgier, M., Lu, W.

(2007) J Biological Chem 282: 19653-19665

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil defensin 1 (HNP-1) (HP-1) (HP1) (Defensin, alpha 1) (protein)

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2PM5 \| pdb_00002pm5	Download File View File

Human alpha-defensin 1 derivative (HNP1)

Lubkowski, J., Pazgier, M., Lu, W.

To be published

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil defensin 1 (HNP-1) (HP-1) (HP1) (Defensin, alpha 1) (protein)
Unique Ligands	PO4

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2RG2 \| pdb_00002rg2	Download File View File

Crystal structure of variant R18L of conjugated bile acid hydrolase from Clostridium perfringens

Rossmann, M., Saenger, W.

To be published

Released	2009-02-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium perfringens
Macromolecule	Choloylglycine hydrolase (protein)
Unique Ligands	EDO, GOL, SO4

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2RLC \| pdb_00002rlc	Download File View File

Crystal Structure of the Conjugated Bile Acid Hydrolase from Clostridium perfringens in Complex with Reaction Products Glycine and Cholate

Rossmann, M., Saenger, W.

To be published

Released	2009-02-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium perfringens
Macromolecule	Choloylglycine hydrolase (protein)
Unique Ligands	CHD, GLY, SO4

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2V5M \| pdb_00002v5m	Download File View File

Structural basis for Dscam isoform specificity

Meijers, R., Puettmann-Holgado, R., Skiniotis, G., Liu, J.-H., Walz, T., Schmucker, D., Wang, J.-H.

(2007) Nature 449: 487

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Drosophila melanogaster
Macromolecule	DSCAM (protein)
Unique Ligands	GOL
Unique branched monosaccharides	NAG

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2WIU \| pdb_00002wiu	Download File View File

Mercury-modified bacterial persistence regulator hipBA

Evdokimov, A., Voznesensky, I., Fennell, K., Anderson, M., Smith, J.F., Fisher, D.A.

(2009) Acta Crystallogr D Biol Crystallogr 65: 875

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli
Macromolecule	HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB (protein) PROTEIN HIPA (protein)
Unique Ligands	CL, HG

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2XB9 \| pdb_00002xb9	Download File View File

Structure of Helicobacter pylori type II dehydroquinase in complex with inhibitor compound (2R)-2-(4-methoxybenzyl)-3-dehydroquinic acid

Otero, J.M., Tizon, L., Llamas-Saiz, A.L., Fox, G.C., Gonzalez-Bello, C., van Raaij, M.J.

(2010) ChemMedChem 5: 1726

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Helicobacter pylori
Macromolecule	3-DEHYDROQUINATE DEHYDRATASE (protein)
Unique Ligands	CIT, XNW

1 to 25 of 103 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

177L | pdb_0000177l

1C0W | pdb_00001c0w

1G9U | pdb_00001g9u

1IIP | pdb_00001iip

1QHB | pdb_00001qhb

1RP5 | pdb_00001rp5

1SLQ | pdb_00001slq

1U8Y | pdb_00001u8y

1VCY | pdb_00001vcy

1Z9J | pdb_00001z9j

1Z9K | pdb_00001z9k

1ZWL | pdb_00001zwl

2A0L | pdb_00002a0l

2ARL | pdb_00002arl

2DPQ | pdb_00002dpq

2H0E | pdb_00002h0e

2H0F | pdb_00002h0f

2H0J | pdb_00002h0j

2PM4 | pdb_00002pm4

2PM5 | pdb_00002pm5

2RG2 | pdb_00002rg2

2RLC | pdb_00002rlc

2V5M | pdb_00002v5m

2WIU | pdb_00002wiu

2XB9 | pdb_00002xb9