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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Cheng, Z."

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Search Summary

This query matches 120 Structures.

Refinements

Structure Determination Methodology

experimental (120)

Scientific Name of Source Organism

	Homo sapiens (54)
	synthetic construct (18)
	Mus musculus (13)
	Neisseria meningitidis 8013 (10)
	Severe acute respiratory syndrome coronavirus 2 (6)
	Staphylococcus delphini (5)
	Haemophilus parainfluenzae (4)
	Saccharomyces cerevisiae (4)
	Xenopus laevis (4)
	Xenopus tropicalis (4)

More...

Taxonomy

	Eukaryota (75)
	Bacteria (41)
	other sequences (18)
	Riboviria (6)
	unclassified sequences (4)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (99)
	ELECTRON MICROSCOPY (18)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (120)
	DNA (18)
	RNA (18)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (13)
	2.0 - 2.5 (32)
	2.5 - 3.0 (35)
	3.0 - 3.5 (21)
	3.5 - 4.0 (6)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (24)
	2010 - 2014 (22)
	2015 - 2019 (28)
	2020 - 2024 (41)

Enzyme Classification Name

	Hydrolases (42)
	Oxidoreductases (13)
	Isomerases (8)
	Transferases (9)
	Lyases (2)
	Ligases (1)

Symmetry Type

	Asymmetric (87)
	Cyclic (35)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (17)
	Alpha and beta proteins (a+b) (9)
	All alpha proteins (4)
	All beta proteins (4)
	Artifacts (3)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 120 Structures

Page 1 of 5

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1FPR \| pdb_00001fpr	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX FORMED BETWEEN THE CATALYTIC DOMAIN OF SHP-1 AND AN IN VITRO PEPTIDE SUBSTRATE PY469 DERIVED FROM SHPS-1.

Yang, J., Cheng, Z., Niu, Z., Zhao, Z.J., Zhou, G.W.

(2000) J Biological Chem 275: 4066-4071

Released	2001-03-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PEPTIDE PY469 (protein) PROTEIN-TYROSINE PHOSPHATASE 1C (protein)

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1RZ4 \| pdb_00001rz4	Download File View File

Crystal Structure of Human eIF3k

Wei, Z., Zhang, P., Zhou, Z., Gong, W.

(2004) J Biological Chem 279: 34983-34990

Released	2004-09-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 3 subunit 11 (protein)
Unique Ligands	SO4

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1S2M \| pdb_00001s2m	Download File View File

Crystal Structure of the DEAD box protein Dhh1p

Cheng, Z., Song, H.

(2005) RNA 11: 1258-1270

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Putative ATP-dependent RNA helicase DHH1 (protein)

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1S4U \| pdb_00001s4u	Download File View File

Crystal Structure analysis of the beta-propeller protein Ski8p

Cheng, Z., Song, H.

(2004) Protein Sci 13: 2673-2684

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Antiviral protein SKI8 (protein)

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1T2L \| pdb_00001t2l	Download File View File

Three Crystal Structures of Human Coactosin-like Protein

Liu, L., Wei, Z., Chen, Z., Wang, Y., Gong, W.

(2004) J Mol Biology 344: 317-323

Released	2004-11-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Coactosin-like protein (protein)

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1T8P \| pdb_00001t8p	Download File View File

Crystal structure of Human erythrocyte 2,3-bisphosphoglycerate mutase

Wang, Y., Wei, Z., Bian, Q., Cheng, Z., Wan, M., Liu, L., Gong, W.

(2004) J Biological Chem 279: 39132-39138

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Bisphosphoglycerate mutase (protein)

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1YFK \| pdb_00001yfk	Download File View File

Crystal structure of human B type phosphoglycerate mutase

Wang, Y., Wei, Z., Liu, L., Gong, W.

(2005) Biochem Biophys Res Commun 331: 1207-1215

Released	2005-05-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Phosphoglycerate mutase 1 (protein)
Unique Ligands	CIT, CL

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1YJX \| pdb_00001yjx	Download File View File

Crystal structure of human B type phosphoglycerate mutase

Wang, Y., Wei, Z., Liu, L., Gong, W.

(2005) Biochem Biophys Res Commun 331: 1207-1215

Released	2005-05-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Phosphoglycerate mutase 1 (protein)
Unique Ligands	CIT, CL

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2A9J \| pdb_00002a9j	Download File View File

Human bisphosphoglycerate mutase complexed with 3-phosphoglycerate (17 days)

Wang, Y., Gong, W.

(2006) J Biological Chem 281: 39642-39648

Released	2006-10-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Bisphosphoglycerate mutase (protein)
Unique Ligands	3PG

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2F0X \| pdb_00002f0x	Download File View File

Crystal structure and function of human thioesterase superfamily member 2(THEM2)

Cheng, Z., Song, F., Shan, X., Wang, Y., Wei, Z., Gong, W.

(2006) Biochem Biophys Res Commun 349: 172-177

Released	2006-10-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Thioesterase superfamily member 2 (protein)
Unique Ligands	SO4

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2F90 \| pdb_00002f90	Download File View File

Crystal structure of bisphosphoglycerate mutase in complex with 3-phosphoglycerate and AlF4-

Wang, Y., Liu, L., Wei, Z., Gong, W.

(2006) J Biological Chem 281: 39642-39648

Released	2006-10-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Bisphosphoglycerate mutase (protein)
Unique Ligands	3PG, ALF

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2GJK \| pdb_00002gjk	Download File View File

Structural and functional insights into the human Upf1 helicase core

Cheng, Z., Muhlrad, D., Parker, R., Song, H.

(2007) EMBO J 26: 253-264

Released	2007-01-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Regulator of nonsense transcripts 1 (protein)
Unique Ligands	ANP, MG

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2GK6 \| pdb_00002gk6	Download File View File

Structural and Functional insights into the human Upf1 helicase core

Cheng, Z., Muhlrad, D., Parker, R., Song, H.

(2007) EMBO J 26: 253-264

Released	2007-01-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Regulator of nonsense transcripts 1 (protein)
Unique Ligands	ADP, MG, PO4

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2GK7 \| pdb_00002gk7	Download File View File

Structural and Functional insights into the human Upf1 helicase core

Cheng, Z., Muhlrad, D., Parker, R., Song, H.

(2007) EMBO J 26: 253-264

Released	2007-01-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Regulator of nonsense transcripts 1 (protein)
Unique Ligands	PO4

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2H4X \| pdb_00002h4x	Download File View File

Human bisphosphoglycerate mutase complex with 3-phosphoglycerate with crystal growth 90 days

Wang, Y., Gong, W.

(2006) J Biological Chem 281: 39642-39648

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Bisphosphoglycerate mutase (protein)
Unique Ligands	3PG

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2H4Z \| pdb_00002h4z	Download File View File

Human bisphosphoglycerate mutase complexed with 2,3-bisphosphoglycerate

Wang, Y., Gong, W.

(2006) J Biological Chem 281: 39642-39648

Released	2006-10-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Bisphosphoglycerate mutase (protein)
Unique Ligands	DG2

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2H5E \| pdb_00002h5e	Download File View File

Crystal structure of E.coli polypeptide release factor RF3

Song, H.W., Zhou, Z.H.

(2007) Cell 129: 929-941

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Peptide chain release factor RF-3 (protein)
Unique Ligands	GDP

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2HHJ \| pdb_00002hhj	Download File View File

Human bisphosphoglycerate mutase complexed with 2,3-bisphosphoglycerate (15 days)

Wang, Y., Gong, W.

(2006) J Biological Chem 281: 39642-39648

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Bisphosphoglycerate mutase (protein)
Unique Ligands	3PG, DG2, HAI

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2I99 \| pdb_00002i99	Download File View File

Crystal structure of human Mu_crystallin at 2.6 Angstrom

Cheng, Z., Sun, L., He, J., Gong, W.

(2007) Protein Sci 16: 329-335

Released	2007-02-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Mu-crystallin homolog (protein)
Unique Ligands	NDP

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2KBE \| pdb_00002kbe	Download File View File

solution structure of amino-terminal domain of Dbp5p

Fan, J.S., Zhang, J., Yang, D.

(2009) J Mol Biology 388: 1-10

Released	2009-10-13
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	ATP-dependent RNA helicase DBP5 (protein)

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2KBF \| pdb_00002kbf	Download File View File

solution structure of carboxyl-terminal domain of Dbp5p

Fan, J.S., Zhang, J., Yang, D.

(2009) J Mol Biology 388: 1-10

Released	2009-10-13
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	ATP-dependent RNA helicase DBP5 (protein)

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2O0F \| pdb_00002o0f	Download File View File

Docking of the modified RF3 X-ray structure into cryo-EM map of E.coli 70S ribosome bound with RF3

Gao, H., Zhou, Z., Rawat, U., Huang, C., Bouakaz, L., Wang, C., Liu, Y., Zavialov, A., Gursky, R., Sanyal, S., Ehrenberg, M., Frank, J., Song, H.

(2007) Cell 129: 929-941

Released	2007-07-24
Method	ELECTRON MICROSCOPY 15.5 Å
Organisms	Escherichia coli
Macromolecule	Peptide chain release factor 3 (protein)

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2ORU \| pdb_00002oru	Download File View File

Solution structure of xtz1-peptide, a beta-hairpin peptide with a structured extension

Campbell, R.E.

(2007) Chembiochem 8: 880-883

Released	2007-05-22
Method	SOLUTION NMR
Macromolecule	xtz1-peptide (protein)

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2XUE \| pdb_00002xue	Download File View File

CRYSTAL STRUCTURE OF JMJD3

Chung, C., Rowland, P., Mosley, J., Thomas, P.J.

(2012) Nature 488: 404

Released	2011-12-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 6B (protein)
Unique Ligands	AKG, FE, SO4, ZN