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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Johnson, C."

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Homo sapiens (15)
	Klebsiella pneumoniae (6)
	Caenorhabditis elegans (4)
	Aspergillus nidulans FGSC A4 (3)
	Aspergillus nidulans (2)
	Bos taurus (2)
	Cylindrospermum licheniforme UTEX B 2014 (2)
	Escherichia coli (2)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (2)
	synthetic construct (2)

More...

Taxonomy

	Eukaryota (26)
	Bacteria (13)
	other sequences (2)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (37)
	ELECTRON MICROSCOPY (1)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (12)
	2.0 - 2.5 (10)
	2.5 - 3.0 (6)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (6)
	2015 - 2019 (22)
	2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (10)
	Transferases (4)

Symmetry Type

	Asymmetric (32)
	Cyclic (8)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	Small proteins (3)
	Alpha and beta proteins (a+b) (7)
	All alpha proteins (2)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 39 Structures

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1TI7 \| pdb_00001ti7	Download File View File

CRYSTAL STRUCTURE OF NMRA, A NEGATIVE TRANSCRIPTIONAL REGULATOR, IN COMPLEX WITH NADP AT 1.7A RESOLUTION

Lamb, H.K., Leslie, K., Dodds, A.L., Nutley, M., Cooper, A., Johnson, C., Thompson, P., Stammers, D.K., Hawkins, A.R.

(2003) J Biological Chem 278: 32107-32114

Released	2004-06-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aspergillus nidulans
Macromolecule	nitrogen metabolite repression regulator NmrA (protein)
Unique Ligands	CL, GOL, K, NAP

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1XGK \| pdb_00001xgk	Download File View File

CRYSTAL STRUCTURE OF N12G AND A18G MUTANT NMRA

Lamb, H.K., Ren, J., Park, A., Johnson, C., Leslie, K., Cocklin, S., Thompson, P., Mee, C., Cooper, A., Stammers, D.K., Hawkins, A.R.

(2004) Protein Sci 13: 3127-3138

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Aspergillus nidulans
Macromolecule	NITROGEN METABOLITE REPRESSION REGULATOR NMRA (protein)
Unique Ligands	CL, GOL, K, PO4

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2GEL \| pdb_00002gel	Download File View File

2.05A crystal structure of Salmonella typhimurium YeaZ, form B

Nichols, C.E., Stammers, D.K.

(2006) Proteins 64: 111-123

Released	2006-08-01
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Putative Gram negative resuscitation promoting factor (protein)

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2GEM \| pdb_00002gem	Download File View File

2.1A crystal structure of Salmonella tyhpimurium YeaZ, a putative Gram-negative RPF, form-A

Nichols, C.E., Stammers, D.K.

(2006) Proteins 64: 111-123

Released	2006-08-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Putative Gram negative resuscitation promoting factor (protein)

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2RCN \| pdb_00002rcn	Download File View File

Crystal Structure of the Ribosomal interacting GTPase YjeQ from the Enterobacterial species Salmonella Typhimurium.

Nichols, C.E., Stammers, D.K.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 922-928

Released	2008-01-29
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Probable GTPase engC (protein)
Unique Ligands	GDP, MG, ZN

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2VUS \| pdb_00002vus	Download File View File

Crystal structure of unliganded NmrA-AreA zinc finger complex

Kotaka, M., Johnson, C., Lamb, H.K., Hawkins, A.R., Ren, J., Stammers, D.K.

(2008) J Mol Biology 381: 373

Released	2008-07-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	NITROGEN METABOLITE REPRESSION REGULATOR NMRA (protein) NITROGEN REGULATORY PROTEIN AREA (protein)
Unique Ligands	CL, SO4, ZN

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2VUT \| pdb_00002vut	Download File View File

Crystal structure of NAD-bound NmrA-AreA zinc finger complex

Kotaka, M., Johnson, C., Lamb, H.K., Hawkins, A.R., Ren, J., Stammers, D.K.

(2008) J Mol Biology 381: 373

Released	2008-07-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	NITROGEN METABOLITE REPRESSION REGULATOR NMRA (protein) NITROGEN REGULATORY PROTEIN AREA (protein)
Unique Ligands	CL, GOL, NAD, ZN

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2VUU \| pdb_00002vuu	Download File View File

Crystal structure of NADP-bound NmrA-AreA zinc finger complex

Kotaka, M., Johnson, C., Lamb, H.K., Hawkins, A.R., Ren, J., Stammers, D.K.

(2008) J Mol Biology 381: 373

Released	2008-07-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	NITROGEN METABOLITE REPRESSION REGULATOR NMRA (protein) NITROGEN REGULATORY PROTEIN AREA (protein)
Unique Ligands	NAP, ZN

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4S1Z \| pdb_00004s1z	Download File View File

Crystal structure of TRABID NZF1 in complex with K29 linked di-Ubiquitin

Kristariyanto, Y.A., Abdul Rehman, S.A., Campbell, D.G., Morrice, N.A., Johnson, C., Toth, R., Kulathu, Y.

(2015) Mol Cell 58: 83-94

Released	2015-04-08
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	Ubiquitin (protein) Ubiquitin thioesterase ZRANB1 (protein)
Unique Ligands	ZN

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4S22 \| pdb_00004s22	Download File View File

Crystal structure of K29 linked di-Ubiquitin

Kristariyanto, Y.A., Abdul Rehman, S.A., Campbell, D.G., Morrice, N.A., Johnson, C., Toth, R., Kulathu, Y.

(2015) Mol Cell 58: 83-94

Released	2015-04-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	Ubiquitin (protein)
Unique Ligands	EDO, GOL, IOD

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5DFZ \| pdb_00005dfz	Download File View File

Structure of Vps34 complex II from S. cerevisiae.

Rostislavleva, K., Soler, N., Ohashi, Y., Zhang, L., Williams, R.L.

(2015) Science 350: aac7365-aac7365

Released	2015-10-07
Method	X-RAY DIFFRACTION 4.4 Å
Organisms	Lama glama Saccharomyces cerevisiae Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 6

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5JSG \| pdb_00005jsg	Download File View File

Crystal structure of Spindlin1 bound to compound EML405

Su, X., Li, H.

(2017) Nat Chem Biol 13: 750-756

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Spindlin-1 (protein)
Unique Ligands	6P9, CL, MG

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5JSJ \| pdb_00005jsj	Download File View File

Crystal structure of Spindlin1 bound to compound EML631

Su, X., Li, H.

(2017) Nat Chem Biol 13: 750-756

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.348 Å
Organisms	Homo sapiens
Macromolecule	Spindlin-1 (protein)
Unique Ligands	6PD, CL, MG

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5N2W \| pdb_00005n2w	Download File View File

WT-Parkin and pUB complex

Kumar, A., Chaugule, V.K., Johnson, C., Toth, R., Sundaramoorthy, R., Knebel, A., Walden, H.

(2017) Nat Struct Mol Biol 24: 475-483

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin (protein) Polyubiquitin-B (protein)
Unique Ligands	CL, TMO, ZN

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5N38 \| pdb_00005n38	Download File View File

S65DParkin and pUB complex

Kumar, A., Chaugule, V.K., Johnson, C., Toth, R., Sundaramoorthy, R., Knebel, A., Walden, H.

(2017) Nat Struct Mol Biol 24: 475-483

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin (protein) Polyubiquitin-B (protein)
Unique Ligands	CL, PEG, ZN

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5U3I \| pdb_00005u3i	Download File View File

CRYSTAL STRUCTURE OF CARBONMONOXY HEMOGLOBIN S (LIGANDED SICKLE CELL HEMOGLOBIN) COMPLEXED WITH GBT compound 31

Partridge, J.R., Choy, R.M., Li, Z., Metcalf, B.

(2017) ACS Med Chem Lett 8: 321-326

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin subunit alpha (protein) Hemoglobin subunit beta (protein)
Unique Ligands	7SJ, CMO, HEM

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5UFJ \| pdb_00005ufj	Download File View File

Crystal Structure of Carbonmonoxy Hemoglobin S (Liganded Sickle Cell Hemoglobin) Complexed with GBT Compound 6

Partridge, J.R., Choy, R.M., Li, Z., Metcalf, B.

(2017) ACS Med Chem Lett 8: 321-326

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin subunit alpha (protein) Hemoglobin subunit beta (protein)
Unique Ligands	86M, CMO, HEM

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6EFJ \| pdb_00006efj	Download File View File

Crystal structure of NDM-1 with compound 9

Akhtar, A., Chen, Y.

(2019) ACS Infect Dis 5: 1013-1021

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	O5E, ZN

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6M7I \| pdb_00006m7i	Download File View File

Crystal structure of KPC-2 with compound 3

Akhtar, A., Chen, Y.

(2019) ACS Infect Dis 5: 1013-1021

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.701 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Carbapenem-hydrolyzing beta-lactamase KPC (protein)
Unique Ligands	GOL, J84

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6MD8 \| pdb_00006md8	Download File View File

Crystal structure of CTX-M-14 with compound 3

Akhtar, A., Chen, Y.

(2019) ACS Infect Dis 5: 1013-1021

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli
Macromolecule	Beta-lactamase CTX-M-14 (protein)
Unique Ligands	DMS, J84

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6MDU \| pdb_00006mdu	Download File View File

Crystal structure of NDM-1 with compound 7

Akhtar, A., Chen, Y.

(2019) ACS Infect Dis 5: 1013-1021

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	GOL, N1G, ZN

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6MEY \| pdb_00006mey	Download File View File

Crystal structure of KPC-2 with compound 9

Akhtar, A., Chen, Y.

(2019) ACS Infect Dis 5: 1013-1021

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Carbapenem-hydrolyzing beta-lactamase KPC (protein)
Unique Ligands	ACT, O5E

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6MIA \| pdb_00006mia	Download File View File

Crystal structure of CTX-M-14 with compound 6

Akhtar, A., Chen, Y.

(2019) ACS Infect Dis 5: 1013-1021

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.399 Å
Organisms	Escherichia coli
Macromolecule	Beta-lactamase (protein)
Unique Ligands	1CE

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6MLL \| pdb_00006mll	Download File View File

Crystal structure of KPC-2 with compound 7

Akhtar, A., Chen, Y.

(2019) ACS Infect Dis 5: 1013-1021

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Carbapenem-hydrolyzing beta-lactamase KPC (protein)
Unique Ligands	GOL, N1G

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6MNP \| pdb_00006mnp	Download File View File

Crystal structure of KPC-2 with compound 6

Akhtar, A., Chen, Y.

(2019) ACS Infect Dis 5: 1013-1021

Released	2019-04-17
Method	X-RAY DIFFRACTION 2.202 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Carbapenem-hydrolyzing beta-lactamase KPC (protein)
Unique Ligands	1CE, GOL

1 to 25 of 39 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1TI7 | pdb_00001ti7

1XGK | pdb_00001xgk

2GEL | pdb_00002gel

2GEM | pdb_00002gem

2RCN | pdb_00002rcn

2VUS | pdb_00002vus

2VUT | pdb_00002vut

2VUU | pdb_00002vuu

4S1Z | pdb_00004s1z

4S22 | pdb_00004s22

5DFZ | pdb_00005dfz

5JSG | pdb_00005jsg

5JSJ | pdb_00005jsj

5N2W | pdb_00005n2w

5N38 | pdb_00005n38

5U3I | pdb_00005u3i

5UFJ | pdb_00005ufj

6EFJ | pdb_00006efj

6M7I | pdb_00006m7i

6MD8 | pdb_00006md8

6MDU | pdb_00006mdu

6MEY | pdb_00006mey

6MIA | pdb_00006mia

6MLL | pdb_00006mll

6MNP | pdb_00006mnp