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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Nithianantham, S."

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Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Homo sapiens (28)
	Drosophila melanogaster (5)
	Escherichia coli (5)
	Fusobacterium nucleatum (5)
	Sus scrofa (5)
	Lachancea kluyveri NRRL Y-12651 (3)
	Caenorhabditis elegans (1)
	Magnetospirillum gryphiswaldense (1)
	Saccharomyces cerevisiae S288C (1)

Taxonomy

	Eukaryota (38)
	Bacteria (11)

Experimental Method

	X-RAY DIFFRACTION (44)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (46)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (11)
	2.0 - 2.5 (11)
	2.5 - 3.0 (9)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)
	4.0 - 4.5 (4)

Release Date

	2005 - 2009 (7)
	2010 - 2014 (2)
	2015 - 2019 (6)
	2020 - 2024 (31)

Enzyme Classification Name

	Transferases (13)
	Hydrolases (8)
	Isomerases (2)
	Lyases (1)
	Translocases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (31)
	Cyclic (12)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	All beta proteins (1)
	Artifacts (4)
	Alpha and beta proteins (a/b) (2)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 46 Structures

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2B5U \| pdb_00002b5u	Download File View File

Crystal Structure Of Colicin E3 V206C Mutant In Complex With Its Immunity Protein

Nallini Vijayarangan, A., Nithianantham, S., Nan, W., Jakes, K., Shoham, M.

To be published

Released	2006-11-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Colicin E3 (protein) Colicin E3 immunity protein (protein)
Unique Ligands	CIT

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2GL2 \| pdb_00002gl2	Download File View File

Crystal structure of the tetra mutant (T66G,R67G,F68G,Y69G) of bacterial adhesin FadA

Nithianantham, S., Xu, M., Wu, N., Shoham, M., Han, Y.W.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 1215-1217

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Fusobacterium nucleatum
Macromolecule	adhesion A (protein)

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3BXZ \| pdb_00003bxz	Download File View File

Crystal structure of the isolated DEAD motor domains from Escherichia coli SecA

Nithianantham, S., Namjoshi, S., Shilton, B.H.

(2008) J Mol Biology 383: 380-389

Released	2008-09-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	Preprotein translocase subunit secA (protein)
Unique Ligands	ADP, MG, SPD

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3ETW \| pdb_00003etw	Download File View File

Crystal Structure of bacterial adhesin FadA

Nithianantham, S., Xu, M., Wu, N., Shoham, M., Han, Y.W.

(2009) J Biological Chem 284: 3865-3872

Released	2008-12-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Fusobacterium nucleatum
Macromolecule	Adhesin A (protein)
Unique Ligands	SCN

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3ETX \| pdb_00003etx	Download File View File

Crystal structure of bacterial adhesin FadA L14A mutant

Nithianantham, S., Xu, M., Wu, N., Shoham, M., Han, Y.W.

(2009) J Biological Chem 284: 3865-3872

Released	2008-12-02
Method	X-RAY DIFFRACTION 3 Å
Organisms	Fusobacterium nucleatum
Macromolecule	Adhesin A (protein)

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3ETY \| pdb_00003ety	Download File View File

Crystal structure of bacterial adhesin FadA L14A mutant

Nithianantham, S., Xu, M., Wu, N., Shoham, M., Han, Y.W.

(2009) J Biological Chem 284: 3865-3872

Released	2008-12-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Fusobacterium nucleatum
Macromolecule	Adhesin A (protein)

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3ETZ \| pdb_00003etz	Download File View File

Crystal structure of bacterial adhesin FadA L76A mutant

Nithianantham, S., Xu, M., Wu, N., Shoham, M., Han, Y.W.

(2009) J Biological Chem 284: 3865-3872

Released	2008-12-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Fusobacterium nucleatum
Macromolecule	Adhesin A (protein)

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4PXT \| pdb_00004pxt	Download File View File

Structural basis for the assembly of the mitotic motor kinesin-5 into bipolar tetramers

Scholey, J.E., Nithianantham, S., Scholey, J.M., Al-Bassam, J.

(2014) Elife 3: e02217-e02217

Released	2014-04-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Drosophila melanogaster
Macromolecule	Bipolar kinesin KRP-130 (protein)

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4PXU \| pdb_00004pxu	Download File View File

Structural basis for the assembly of the mitotic motor kinesin-5 into bipolar tetramers

Scholey, J.E., Nithianantham, S., Scholey, J.M., Al-Bassam, J.

(2014) Elife 3: e02217-e02217

Released	2014-04-23
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	Drosophila melanogaster
Macromolecule	Bipolar kinesin KRP-130 (protein)
Unique Ligands	MPD

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5CYA \| pdb_00005cya	Download File View File

Crystal structure of Arl2 GTPase-activating protein tubulin cofactor C (TBCC)

Nithianantham, S., Le, S., Seto, E., Jia, W., Leary, J., Corbett, K.D., Moore, J.K., Al-Bassam, J.

(2015) Elife 4:

Released	2015-08-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Tubulin-specific chaperone C (protein)
Unique Ligands	SO4

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6B5C \| pdb_00006b5c	Download File View File

Structural Basis for Katanin Self-Assembly

Nithianantham, S., Al-Bassam, J.

(2018) J Biological Chem 293: 10590-10605

Released	2018-05-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Katanin p60 ATPase-containing subunit A-like 1 (protein)
Unique Ligands	PG4

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6B5D \| pdb_00006b5d	Download File View File

Structural Basis for Katanin Self-Assembly

Nithianantham, S., Al-Bassam, J.

(2018) J Biological Chem 293: 10590-10605

Released	2018-05-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Caenorhabditis elegans
Macromolecule	Meiotic spindle formation protein mei-1 (protein)
Unique Ligands	ADP

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6MZE \| pdb_00006mze	Download File View File

Structural Basis of Tubulin Recruitment and Assembly by Microtubule Polymerases with Tumor Overexpressed Gene (TOG) Domain Arrays

Nithianantham, S., Al-Bassam, J.

(2018) Elife 7:

Released	2018-11-28
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Escherichia coli Lachancea kluyveri NRRL Y-12651 Sus scrofa
Macromolecule	Designed ankyrin repeat protein (DARPIN) D1 (protein) Protein Stu2p/Alp14p (protein) Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	GDP, GTP, MG

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6MZF \| pdb_00006mzf	Download File View File

Structural Basis of Tubulin Recruitment and Assembly by Microtubule Polymerases with Tumor Overexpressed Gene (TOG) Domain Arrays

Nithianantham, S., Al-Bassam, J.

(2018) Elife 7:

Released	2018-11-28
Method	X-RAY DIFFRACTION 4.4 Å
Organisms	Escherichia coli Lachancea kluyveri NRRL Y-12651 Sus scrofa
Macromolecule	Designed ankyrin repeat protein (DARPIN) D1 (protein) Protein Stu2p/Alp14p (protein) Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	GDP, GTP, MG

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6MZG \| pdb_00006mzg	Download File View File

Structural Basis of Tubulin Recruitment and Assembly by Microtubule Polymerases with Tumor Overexpressed Gene (TOG) Domain Arrays

Nithianantham, S., Al-Bassam, J.

(2018) Elife 7:

Released	2018-11-28
Method	X-RAY DIFFRACTION 3.208 Å
Organisms	Escherichia coli Lachancea kluyveri NRRL Y-12651 Sus scrofa
Macromolecule	Protein Stu2p/Alp14p (protein) Truncated Darpin-D1 (protein) Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	GDP, GTP, MG

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6VPO \| pdb_00006vpo	Download File View File

Cryo-EM structure of microtubule-bound KLP61F motor domain in the AMPPNP state

Bodrug, T., Wilson-Kubalek, E.M., Nithianantham, S., Debs, G., Sindelar, C.V., Milligan, R., Al-Bassam, J.

(2020) Elife 9:

Released	2020-02-19
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Drosophila melanogaster Sus scrofa
Macromolecule	Kinesin-like protein Klp61F (protein) Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	ANP, GDP, GTP, MG

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6VPP \| pdb_00006vpp	Download File View File

Cryo-EM structure of microtubule-bound KLP61F motor with tail domain in the nucleotide-free state

Bodrug, T., Wilson-Kubalek, E.M., Nithianantham, S., Debs, G., Sindelar, C.V., Milligan, R., Al-Bassam, J.

(2020) Elife 9:

Released	2020-02-19
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Drosophila melanogaster Sus scrofa
Macromolecule	Kinesin-like protein Klp61F (protein) Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	GDP, GTP, MG

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6WTN \| pdb_00006wtn	Download File View File

Human JAK2 JH1 domain in complex with Ruxolitinib

Yu, S., Nithianantham, S., Fischer, M.

(2021) Blood 138: 2313-2326

Released	2021-05-05
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK2 (protein)
Unique Ligands	EDO, RXT

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6WTO \| pdb_00006wto	Download File View File

Human JAK2 JH1 domain in complex with Baricitinib

Yu, S., Nithianantham, S., Fischer, M.

(2021) Blood 138: 2313-2326

Released	2021-05-05
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK2 (protein)
Unique Ligands	3JW, EDO

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6WTP \| pdb_00006wtp	Download File View File

Human JAK2 JH1 domain in complex with PROTAC-intermediate linker handle 3

Yu, S., Nithianantham, S., Fischer, M.

(2021) Blood 138: 2313-2326

Released	2021-05-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK2 (protein)
Unique Ligands	GOL, U8P

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6WTQ \| pdb_00006wtq	Download File View File

Human JAK2 JH1 domain in complex with PROTAC-intermediate linker handle 4

Yu, S., Nithianantham, S., Fischer, M.

(2021) Blood 138: 2313-2326

Released	2021-05-05
Method	X-RAY DIFFRACTION 1.79968475557 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK2 (protein)
Unique Ligands	EDO, TRS, U8J

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6WWB \| pdb_00006wwb	Download File View File

Crystal Structure of the second bromodomain of human BRD2 in complex with the compound 3b

White, S.W., Yun, M.

(2021) Angew Chem Int Ed Engl 60: 26663-26670

Released	2021-11-17
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 2 (protein)
Unique Ligands	EDO, YA3

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7LP0 \| pdb_00007lp0	Download File View File

Crystal structure of BPTF bromodomain in complex with inhibitor Pdy-3-077

Chan, A., Schonbrunn, E.

(2021) J Med Chem 64: 13902-13917

Released	2022-08-10
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	Nucleosome-remodeling factor subunit BPTF (protein)
Unique Ligands	DMS, EDO, P2L

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7LPK \| pdb_00007lpk	Download File View File

Crystal structure of BPTF bromodomain in complex with inhibitor HZ-03-112

Chan, A., Schonbrunn, E.

(2021) J Med Chem 64: 13902-13917

Released	2022-08-10
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Homo sapiens
Macromolecule	Nucleosome-remodeling factor subunit BPTF (protein)
Unique Ligands	EDO, Y9P

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7LRK \| pdb_00007lrk	Download File View File

Crystal structure of BPTF bromodomain in complex with inhibitor Pdy-3-093

Chan, A., Schonbrunn, E.

(2021) J Med Chem 64: 13902-13917

Released	2022-08-10
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Homo sapiens
Macromolecule	Nucleosome-remodeling factor subunit BPTF (protein)
Unique Ligands	EDO, YC4

1 to 25 of 46 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2B5U | pdb_00002b5u

2GL2 | pdb_00002gl2

3BXZ | pdb_00003bxz

3ETW | pdb_00003etw

3ETX | pdb_00003etx

3ETY | pdb_00003ety

3ETZ | pdb_00003etz

4PXT | pdb_00004pxt

4PXU | pdb_00004pxu

5CYA | pdb_00005cya

6B5C | pdb_00006b5c

6B5D | pdb_00006b5d

6MZE | pdb_00006mze

6MZF | pdb_00006mzf

6MZG | pdb_00006mzg

6VPO | pdb_00006vpo

6VPP | pdb_00006vpp

6WTN | pdb_00006wtn

6WTO | pdb_00006wto

6WTP | pdb_00006wtp

6WTQ | pdb_00006wtq

6WWB | pdb_00006wwb

7LP0 | pdb_00007lp0

7LPK | pdb_00007lpk

7LRK | pdb_00007lrk