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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Stark, H."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Homo sapiens (30)
	Escherichia coli (3)
	Saccharolobus solfataricus (3)
	synthetic construct (1)

Taxonomy

	Eukaryota (30)
	Archaea (3)
	Bacteria (3)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (29)
	ELECTRON MICROSCOPY (7)

Polymer Entity Type

Protein (36)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (12)
	2.0 - 2.5 (11)
	2.5 - 3.0 (5)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (2)
	2020 - 2024 (31)

Enzyme Classification Name

	Hydrolases (21)
	Transferases (22)
	Ligases (2)

Symmetry Type

	Asymmetric (25)
	Cyclic (4)
	Dihedral (7)

SCOP Classification

	All beta proteins (3)
	Alpha and beta proteins (a/b) (3)
	All alpha proteins (7)

AllSelected

1 to 25 of 36 Structures

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2XVO \| pdb_00002xvo	Download File View File

SSO1725, a protein involved in the CRISPR/Cas pathway

Reeks, J., Liu, H., Naismith, J., White, M., McMahon, S.

(2012) Mol Cell 45: 303

Released	2010-12-29
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Saccharolobus solfataricus
Macromolecule	SSO1725 (protein)
Unique Ligands	BME, SO4

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3ZC4 \| pdb_00003zc4	Download File View File

The structure of Csa5 from Sulfolobus solfataricus.

Reeks, J., Anderson, L., White, M.F., Naismith, J.H.

(2013) RNA Biol 10: 762

Released	2013-02-20
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Saccharolobus solfataricus
Macromolecule	SSO1398 (protein)
Unique Ligands	PEG

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3ZFV \| pdb_00003zfv	Download File View File

Crystal structure of an archaeal CRISPR-associated Cas6 nuclease

Reeks, J., Liu, H., White, M.F., Naismith, J.H.

(2013) Biochem J 452: 223

Released	2013-04-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharolobus solfataricus
Macromolecule	CRISPR-ASSOCIATED ENDORIBONUCLEASE CAS6 1 (protein)
Unique Ligands	GOL

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4UD7 \| pdb_00004ud7	Download File View File

Structure of the stapled peptide YS-02 bound to MDM2

Tan, Y.S., Reeks, J., Brown, C.J., Jennings, C.E., Eapen, R.S., Tng, Q.S., Thean, D., Ying, Y.T., Gago, F.J.F., Lane, D.P., Noble, M.E.M., Verma, C.

(2016) J Phys Chem Lett 7: 3452-3457

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	MDM2 (protein) YS-02 (protein)

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4UE1 \| pdb_00004ue1	Download File View File

Structure of the stapled peptide YS-01 bound to MDM2

Tan, Y.S., Reeks, J., Brown, C.J., Jennings, C.E., Eapen, R.S., Tng, Q.S., Thean, D., Ying, Y.T., Gago, F.J.F., Lane, D.P., Noble, M.E.M., Verma, C.

(2016) J Phys Chem Lett 7: 3452-3457

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	E3 UBIQUITIN-PROTEIN LIGASE MDM2 (protein) YS-01 (protein)

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6SG4 \| pdb_00006sg4	Download File View File

Structure of CDK2/cyclin A M246Q, S247EN

Salamina, M., Basle, A., Massa, B., Noble, M.E.M., Endicott, J.A.

(2021) J Mol Biology 433: 166795-166795

Released	2021-01-27
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-A2 (protein) Cyclin-dependent kinase 2 (protein)

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6TSH \| pdb_00006tsh	Download File View File

Beta-galactosidase in complex with deoxygalacto-nojirimycin

Saur, M., Hartshorn, M.J., Dong, J., Reeks, J., Bunkoczi, G., Jhoti, H., Williams, P.A.

(2020) Drug Discov Today 25: 485-490

Released	2020-01-08
Method	ELECTRON MICROSCOPY 2.3 Å
Organisms	Escherichia coli
Macromolecule	Beta-galactosidase (protein)
Unique Ligands	DGJ, MG

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6TSK \| pdb_00006tsk	Download File View File

Beta-galactosidase in complex with L-ribose

Saur, M., Hartshorn, M.J., Dong, J., Reeks, J., Bunkoczi, G., Jhoti, H., Williams, P.A.

(2020) Drug Discov Today 25: 485-490

Released	2020-01-08
Method	ELECTRON MICROSCOPY 2.3 Å
Organisms	Escherichia coli
Macromolecule	Beta-galactosidase (protein)
Unique Ligands	0MK, MG

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6TTE \| pdb_00006tte	Download File View File

Beta-galactosidase in complex with PETG

Saur, M., Hartshorn, M.J., Dong, J., Reeks, J., Bunkoczi, G., Jhoti, H., Williams, P.A.

(2020) Drug Discov Today 25: 485-490

Released	2020-01-15
Method	ELECTRON MICROSCOPY 2.2 Å
Organisms	Escherichia coli
Macromolecule	Beta-galactosidase (protein)
Unique Ligands	MG, PTQ

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6TTF \| pdb_00006ttf	Download File View File

PKM2 in complex with Compound 5

Saur, M., Hartshorn, M.J., Dong, J., Reeks, J., Bunkoczi, G., Jhoti, H., Williams, P.A.

(2020) Drug Discov Today 25: 485-490

Released	2020-01-15
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Pyruvate kinase PKM (protein)
Unique Ligands	FBP, LZ2

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6TTH \| pdb_00006tth	Download File View File

PKM2 in complex with L-threonine

Saur, M., Hartshorn, M.J., Dong, J., Reeks, J., Bunkoczi, G., Jhoti, H., Williams, P.A.

(2020) Drug Discov Today 25: 485-490

Released	2020-01-15
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Homo sapiens
Macromolecule	Pyruvate kinase PKM (protein)
Unique Ligands	FBP, THR

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6TTI \| pdb_00006tti	Download File View File

PKM2 in complex with Compound 6

Saur, M., Hartshorn, M.J., Dong, J., Reeks, J., Bunkoczi, G., Jhoti, H., Williams, P.A.

(2020) Drug Discov Today 25: 485-490

Released	2020-01-15
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Homo sapiens
Macromolecule	Pyruvate kinase PKM (protein)
Unique Ligands	DMS, FBP, NXE

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6TTQ \| pdb_00006ttq	Download File View File

PKM2 in complex with Compound 10

Saur, M., Hartshorn, M.J., Dong, J., Reeks, J., Bunkoczi, G., Jhoti, H., Williams, P.A.

(2020) Drug Discov Today 25: 485-490

Released	2020-01-15
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Homo sapiens
Macromolecule	Pyruvate kinase PKM (protein)
Unique Ligands	FBP, NXH

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7BIR \| pdb_00007bir	Download File View File

Inhibitor of MDM2-p53 Interaction

Williams, P.A.

(2021) J Med Chem 64: 4071-4088

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	SO4, TUZ

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7BIT \| pdb_00007bit	Download File View File

Inhibitor of MDM2-p53 Interaction

Williams, P.A.

(2021) J Med Chem 64: 4071-4088

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	SO4, TV5

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7BIV \| pdb_00007biv	Download File View File

Inhibitor of MDM2-p53 Interaction

Williams, P.A.

(2021) J Med Chem 64: 4071-4088

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	DMS, EDO, SO4, TUW

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7BJ0 \| pdb_00007bj0	Download File View File

Inhibitor of MDM2-p53 Interaction

Williams, P.A.

(2021) J Med Chem 64: 4071-4088

Released	2021-04-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	TVH

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7BJ6 \| pdb_00007bj6	Download File View File

Inhibitor of MDM2-p53 Interaction

Williams, P.A.

(2021) J Med Chem 64: 4071-4088

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	DMS, EDO, SO4, TVK

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7BMG \| pdb_00007bmg	Download File View File

Inhibitor of MDM2-p53 Interaction

Williams, P.A.

(2021) J Med Chem 64: 4071-4088

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	EDO, U3Z

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7ZZO \| pdb_00007zzo	Download File View File

HDAC2 in complex with an inhibitor

Cleasby, A., Tisi, D.

(2022) ACS Med Chem Lett 13: 1591-1597

Released	2022-09-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 2 (protein)
Unique Ligands	CA, KIZ, KZF, NA, PEG, PG4, ZN

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7ZZP \| pdb_00007zzp	Download File View File

Structure of HDAC2 complexed with an inhibitory ligand

Cleasby, A., Tisi, D.

(2022) ACS Med Chem Lett 13: 1591-1597

Released	2022-09-21
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 2 (protein)
Unique Ligands	2OP, CA, DMS, EDO, KJ6, NA, NHE, PEG, PG4, PGE, ZN

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7ZZR \| pdb_00007zzr	Download File View File

HDAC2 in complex with inhibitory ligand

Cleasby, A., Tisi, D.

(2022) ACS Med Chem Lett 13: 1591-1597

Released	2022-09-21
Method	X-RAY DIFFRACTION 2.168 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 2 (protein)
Unique Ligands	CA, EDO, KJN, NA, NHE, PEG, PG4, ZN

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7ZZS \| pdb_00007zzs	Download File View File

HDAC2 complexed with an inhibitory ligand

Cleasby, A., Tisi, D.

(2022) ACS Med Chem Lett 13: 1591-1597

Released	2022-09-21
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 2 (protein)
Unique Ligands	CA, EDO, KK0, KZF, NA, PEG, PG4, SHH, ZN

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7ZZT \| pdb_00007zzt	Download File View File

Ligand binding to HDAC2

Cleasby, A., Tisi, D.

(2022) ACS Med Chem Lett 13: 1591-1597

Released	2022-09-21
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 2 (protein)
Unique Ligands	CA, EDO, KJF, NA, NHE, PEG, PG4, PGE, ZN

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7ZZU \| pdb_00007zzu	Download File View File

Inhibitory Ligand binding to HDAC2

Cleasby, A., Tisi, D.

(2022) ACS Med Chem Lett 13: 1591-1597

Released	2022-09-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 2 (protein)
Unique Ligands	CA, EDO, KKI, NA, NHE, PEG, PG4, ZN

1 to 25 of 36 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2XVO | pdb_00002xvo

3ZC4 | pdb_00003zc4

3ZFV | pdb_00003zfv

4UD7 | pdb_00004ud7

4UE1 | pdb_00004ue1

6SG4 | pdb_00006sg4

6TSH | pdb_00006tsh

6TSK | pdb_00006tsk

6TTE | pdb_00006tte

6TTF | pdb_00006ttf

6TTH | pdb_00006tth

6TTI | pdb_00006tti

6TTQ | pdb_00006ttq

7BIR | pdb_00007bir

7BIT | pdb_00007bit

7BIV | pdb_00007biv

7BJ0 | pdb_00007bj0

7BJ6 | pdb_00007bj6

7BMG | pdb_00007bmg

7ZZO | pdb_00007zzo

7ZZP | pdb_00007zzp

7ZZR | pdb_00007zzr

7ZZS | pdb_00007zzs

7ZZT | pdb_00007zzt

7ZZU | pdb_00007zzu