RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Chemical ID(s) = F63

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Chemical Attributes

Help

NOT

Count

Add Subquery

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 5 Structures.

Refinements

Structure Determination Methodology

experimental (5)

Scientific Name of Source Organism

	Cryphonectria parasitica (4)
	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)

Taxonomy

	Eukaryota (4)
	Bacteria (1)

Experimental Method

X-RAY DIFFRACTION (5)

Polymer Entity Type

Protein (5)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (1)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (3)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (4)
	Transferases (1)

Symmetry Type

	Asymmetric (4)
	Cyclic (1)

SCOP Classification

	All beta proteins (3)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 5 of 5 Structures

Page 1 of 1

Sort by

Explore in 3D

3PB5 \| pdb_00003pb5	Download File View File

Endothiapepsin in complex with a fragment

Koester, H., Heine, A., Klebe, G.

(2011) J Med Chem 54: 7784-7796

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	F63, GOL

Explore in 3D

4Y57 \| pdb_00004y57	Download File View File

Endothiapepsin in complex with fragment 63

Radeva, N., Heine, A., Klebe, G.

To be published

Released	2016-03-02
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	ACT, EDO, F63, GOL

Explore in 3D

5MB0 \| pdb_00005mb0	Download File View File

Cocktail experiment A: fragments 63, 267, and 291 in complex with Endothiapepsin

Radeva, N., Heine, A., Klebe, G.

To be published

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.149 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	47V, DMS, F63, F91, GOL

Explore in 3D

6FSO \| pdb_00006fso	Download File View File

Crystal Structure of TGT in complex with methyl({[5-(pyridin-3-yloxy)furan-2-yl]methyl})amine

Hassaan, E., Heine, A., Klebe, G.

(2020) ChemMedChem 15: 324-337

Released	2019-03-20
Method	X-RAY DIFFRACTION 1.449 Å
Organisms	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	ACT, DMS, F63, PEG, PG4, PGE, ZN

Explore in 3D

6ZZ2 \| pdb_00006zz2	Download File View File

Cocktail experiment E: fragments 52, 58, and 63 at 90 mM concentration in complex with Endothiapepsin

Hassaan, E., Klebe, G., Heine, A., Schiebel, J., Koester, H.

To be published

Released	2021-08-11
Method	X-RAY DIFFRACTION 1.14885439131 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	DMS, F63, GOL

1 to 5 of 5 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3PB5 | pdb_00003pb5

Endothiapepsin in complex with a fragment

4Y57 | pdb_00004y57

Endothiapepsin in complex with fragment 63

5MB0 | pdb_00005mb0

Cocktail experiment A: fragments 63, 267, and 291 in complex with Endothiapepsin

6FSO | pdb_00006fso

Crystal Structure of TGT in complex with methyl({[5-(pyridin-3-yloxy)furan-2-yl]methyl})amine

6ZZ2 | pdb_00006zz2

Cocktail experiment E: fragments 52, 58, and 63 at 90 mM concentration in complex with Endothiapepsin

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3PB5 | pdb_00003pb5

Endothiapepsin in complex with a fragment

4Y57 | pdb_00004y57

Endothiapepsin in complex with fragment 63

5MB0 | pdb_00005mb0

Cocktail experiment A: fragments 63, 267, and 291 in complex with Endothiapepsin

6FSO | pdb_00006fso

Crystal Structure of TGT in complex with methyl({[5-(pyridin-3-yloxy)furan-2-yl]methyl})amine

6ZZ2 | pdb_00006zz2

Cocktail experiment E: fragments 52, 58, and 63 at 90 mM concentration in complex with Endothiapepsin