7O7Z
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth AB] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8095265 | 3000135 | SCOP2B (2022-06-29) |
H [auth AG] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052584 | 3000068 | SCOP2B (2022-06-29) |
Y [auth Am] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052971 | 3001284 | SCOP2B (2022-06-29) |
Y [auth Am] | SCOP2B Superfamily | Homeodomain-like | 8052970 | 3000001 | SCOP2B (2022-06-29) |
KA [auth Ay] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090991 | 3000034 | SCOP2B (2022-06-29) |
RA [auth BC] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052828 | 3002143 | SCOP2B (2022-06-29) |
RA [auth BC] | SCOP2B Superfamily | Ribosomal protein L4 | 8052829 | 3001146 | SCOP2B (2022-06-29) |
XA [auth BI] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8097320 | 3000884 | SCOP2B (2022-06-29) |
KB [auth BV] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072048 | 3000433 | SCOP2B (2022-06-29) |
TB [auth Be] | SCOP2B Superfamily | Ribosomal protein L32e | 8102088 | 3000982 | SCOP2B (2022-06-29) |
ZB [auth Bk] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8093716 | 3002206 | SCOP2B (2022-06-29) |
L [auth AZ] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8097826 | 3001397 | SCOP2B (2022-06-29) |
M [auth Aa] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053216 | 3002166 | SCOP2B (2022-06-29) |
Q [auth Ae] | SCOP2B Superfamily | Ribosomal protein S7 | 8066001 | 3000799 | SCOP2B (2022-06-29) |
T [auth Ah] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053075 | 3000433 | SCOP2B (2022-06-29) |
V [auth Aj] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055720 | 3000034 | SCOP2B (2022-06-29) |
W [auth Ak] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052707 | 3000135 | SCOP2B (2022-06-29) |
W [auth Ak] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052708 | 3002138 | SCOP2B (2022-06-29) |
X [auth Al] | SCOP2B Superfamily | L30e-like | 8063980 | 3001739 | SCOP2B (2022-06-29) |
Z [auth An] | SCOP2B Superfamily | Translational machinery components | 8097824 | 3000571 | SCOP2B (2022-06-29) |
BA [auth Ap] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082683 | 3000100 | SCOP2B (2022-06-29) |
DA [auth Ar] | SCOP2B Superfamily | S13-like H2TH domain | 8101439 | 3000053 | SCOP2B (2022-06-29) |
FA [auth At] | SCOP2B Superfamily | Ribosomal protein S10 | 8097814 | 3001336 | SCOP2B (2022-06-29) |
HA [auth Av] | SCOP2B Superfamily | Ribosomal protein S8 | 8079081 | 3000709 | SCOP2B (2022-06-29) |
QA [auth BB] | SCOP2B Superfamily | Translational proteins | 8078357 | 3000811 | SCOP2B (2022-06-29) |
E [auth AD] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053455 | 3002190 | SCOP2B (2022-06-29) |
YA [auth BJ] | SCOP2B Superfamily | RL5-like | 8073894 | 3001709 | SCOP2B (2022-06-29) |
CB [auth BN] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082477 | 3000210 | SCOP2B (2022-06-29) |
MB [auth BX] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095966 | 3000210 | SCOP2B (2022-06-29) |
NB [auth BY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076754 | 3000334 | SCOP2B (2022-06-29) |
OB [auth BZ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053047 | 3000334 | SCOP2B (2022-06-29) |
PB [auth Ba] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8097818 | 3001045 | SCOP2B (2022-06-29) |
RB [auth Bc] | SCOP2B Superfamily | L30e-like | 8094953 | 3001739 | SCOP2B (2022-06-29) |
UB [auth Bf] | SCOP2B Superfamily | Translational proteins | 8093714 | 3000811 | SCOP2B (2022-06-29) |
VB [auth Bg] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8103328 | 3002203 | SCOP2B (2022-06-29) |
XB [auth Bi] | SCOP2B Superfamily | Ribosomal protein L36e | 8053119 | 3002161 | SCOP2B (2022-06-29) |
AC [auth Bl] | SCOP2B Superfamily | Ribosomal protein L39e | 8095597 | 3001756 | SCOP2B (2022-06-29) |
DC [auth Bp] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8101435 | 3001320 | SCOP2B (2022-06-29) |
HC [auth Bv] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8065344 | 3001911 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth AB] | Ribosomal_S28e | e7o7zAB1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S28e | ECOD (1.6) |
H [auth AG] | Ribosomal_S14_2 | e7o7zAG1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_2 | ECOD (1.6) |
Y [auth Am] | Ribosomal_S13_N | e7o7zAm1 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: Ribosomal_S13_N | ECOD (1.6) |
Y [auth Am] | Ribosomal_S15_2 | e7o7zAm2 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_2 | ECOD (1.6) |
EA [auth As] | Ribosomal_S19e | e7o7zAs1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S19e | ECOD (1.6) |
GA [auth Au] | Ribosomal_S21e | e7o7zAu1 | A: a+b two layers | X: 40S ribosomal protein rpS21 (S21e) (From Topology) | H: 40S ribosomal protein rpS21 (S21e) (From Topology) | T: 40S ribosomal protein rpS21 (S21e) | F: Ribosomal_S21e | ECOD (1.6) |
KA [auth Ay] | Ribosomal_S25 | e7o7zAy1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S25 | ECOD (1.6) |
PA [auth BA] | Ribosomal_L2_1 | e7o7zBA1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
PA [auth BA] | Ribosomal_L2_C_2 | e7o7zBA2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_2 | ECOD (1.6) |
RA [auth BC] | Ribosomal_L4 | e7o7zBC1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
RA [auth BC] | Ribos_L4_asso_C | e7o7zBC2 | A: extended segments | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: Ribos_L4_asso_C | ECOD (1.6) |
TA [auth BE] | Ribosomal_L6e | e7o7zBE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L6e | ECOD (1.6) |
XA [auth BI] | Ribosomal_L16 | e7o7zBI1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
AB [auth BL] | Ribosomal_L13e | e7o7zBL1 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: Ribosomal_L13e | ECOD (1.6) |
DB [auth BO] | Ribosomal_L13 | e7o7zBO1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
FB [auth BQ] | Ribosomal_L18 | e7o7zBQ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
KB [auth BV] | Ribosomal_L14 | e7o7zBV1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
TB [auth Be] | Ribosomal_L32e | e7o7zBe1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: Ribosomal_L32e | ECOD (1.6) |
ZB [auth Bk] | Ribosomal_L38e | e7o7zBk1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: Ribosomal_L38e | ECOD (1.6) |
CC [auth Bo] | Ribosomal_L44 | e7o7zBo1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L44 | ECOD (1.6) |
FC [auth Bs] | Ribosomal_L10 | e7o7zBs1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: Ribosomal_L10 | ECOD (1.6) |
FC [auth Bs] | Ribosomal_P0_L10e | e7o7zBs2 | A: a+b two layers | X: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | T: Insertion domain in 60S ribosomal protein rpP0 (L10P) | F: Ribosomal_P0_L10e | ECOD (1.6) |
GC [auth Bt] | Ribosomal_L11 | e7o7zBt2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: Ribosomal_L11 | ECOD (1.6) |
GC [auth Bt] | Ribosomal_L11_N | e7o7zBt1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: Ribosomal_L11_N | ECOD (1.6) |
L [auth AZ] | Ribosomal_S2_2 | e7o7zAZ1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2_2 | ECOD (1.6) |
M [auth Aa] | Ribosomal_S3Ae_N | e7o7zAa2 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: Ribosomal_S3Ae_N | ECOD (1.6) |
M [auth Aa] | Ribosomal_S3Ae_C | e7o7zAa1 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: Ribosomal_S3Ae_C | ECOD (1.6) |
N [auth Ab] | Ribosomal_S5_C_1 | e7o7zAb1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C_1 | ECOD (1.6) |
N [auth Ab] | Ribosomal_S5_3 | e7o7zAb3 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5_3 | ECOD (1.6) |
N [auth Ab] | Ribosomal_S5_2 | e7o7zAb2 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: Ribosomal_S5_2 | ECOD (1.6) |
O [auth Ac] | Ribosomal_S3_C | e7o7zAc1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
O [auth Ac] | KH_2_3 | e7o7zAc2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_3 | ECOD (1.6) |
P [auth Ad] | Ribosomal_S4e | e7o7zAd1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S4e | ECOD (1.6) |
P [auth Ad] | 40S_S4_C | e7o7zAd3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: 40S_S4_C | ECOD (1.6) |
P [auth Ad] | RS4NT | e7o7zAd2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: RS4NT | ECOD (1.6) |
Q [auth Ae] | Ribosomal_S7_1 | e7o7zAe1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
R [auth Af] | Ribosomal_S6e | e7o7zAf1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_S6e | ECOD (1.6) |
S [auth Ag] | Ribosomal_S7e_N | e7o7zAg2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: Ribosomal_S7e_N | ECOD (1.6) |
S [auth Ag] | Ribosomal_S7e_C_1 | e7o7zAg1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: Ribosomal_S7e_C_1 | ECOD (1.6) |
B [auth AA] | Ribosomal_S27e | e7o7zAA1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27e | ECOD (1.6) |
T [auth Ah] | Ribosomal_S8e | e7o7zAh1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_S8e | ECOD (1.6) |
U [auth Ai] | S4 | e7o7zAi1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
V [auth Aj] | S10_plectin | e7o7zAj1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: S10_plectin | ECOD (1.6) |
W [auth Ak] | Ribosomal_S17_1 | e7o7zAk1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
X [auth Al] | Ribosomal_L7Ae | e7o7zAl1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
Z [auth An] | Ribosomal_S11 | e7o7zAn1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
AA [auth Ao] | Ribosomal_S19 | e7o7zAo1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
BA [auth Ap] | Ribosomal_S9 | e7o7zAp1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
CA [auth Aq] | Ribosomal_S17e | e7o7zAq1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: Ribosomal_S17e | ECOD (1.6) |
DA [auth Ar] | Ribosomal_S13 | e7o7zAr1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13 | ECOD (1.6) |
FA [auth At] | Ribosomal_S10_1 | e7o7zAt1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10_1 | ECOD (1.6) |
HA [auth Av] | Ribosomal_S8_N_1 | e7o7zAv2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N_1 | ECOD (1.6) |
HA [auth Av] | Ribosomal_S8_C_1 | e7o7zAv1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C_1 | ECOD (1.6) |
IA [auth Aw] | Ribosom_S12_S23 | e7o7zAw1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
JA [auth Ax] | Ribosomal_S24e | e7o7zAx1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_S24e | ECOD (1.6) |
LA [auth Az] | Ribosomal_L41 | e7o7zAz1 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: Ribosomal_L41 | ECOD (1.6) |
D [auth AC] | Ribosomal_S27 | e7o7zAC1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27 | ECOD (1.6) |
QA [auth BB] | Ribosomal_L3 | e7o7zBB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
SA [auth BD] | Ribosomal_L5e | e7o7zBD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L5e | ECOD (1.6) |
UA [auth BF] | Ribosomal_L30_1 | e7o7zBF1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30_1 | ECOD (1.6) |
VA [auth BG] | Ribosomal_L7Ae_1 | e7o7zBG1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
WA [auth BH] | Ribosomal_L6_2 | e7o7zBH2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_2 | ECOD (1.6) |
WA [auth BH] | Ribosomal_L6 | e7o7zBH1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
E [auth AD] | Ribosomal_S30 | e7o7zAD1 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: Ribosomal_S30 | ECOD (1.6) |
YA [auth BJ] | Ribosomal_L5_C | e7o7zBJ1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
BB [auth BM] | Ribosomal_L14e | e7o7zBM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L14e | ECOD (1.6) |
CB [auth BN] | Ribosomal_L15e | e7o7zBN1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L15e | ECOD (1.6) |
EB [auth BP] | Ribosomal_L22 | e7o7zBP1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
GB [auth BR] | Ribosomal_L19e_N | e7o7zBR1 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: Ribosomal_L19e_N | ECOD (1.6) |
GB [auth BR] | Ribosomal_L19e_C | e7o7zBR2 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: Ribosomal_L19e_C | ECOD (1.6) |
F [auth AE] | Ribosomal_S26e | e7o7zAE1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S26e | ECOD (1.6) |
HB [auth BS] | Ribosomal_L18A | e7o7zBS1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: Ribosomal_L18A | ECOD (1.6) |
IB [auth BT] | Ribosomal_L21e | e7o7zBT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L21e | ECOD (1.6) |
JB [auth BU] | Ribosomal_L22e | e7o7zBU1 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: Ribosomal_L22e | ECOD (1.6) |
LB [auth BW] | Ribosomal_L24e | e7o7zBW1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_L24e | ECOD (1.6) |
MB [auth BX] | Ribosomal_L23_3 | e7o7zBX1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_3 | ECOD (1.6) |
NB [auth BY] | Ribosomal_L26 | e7o7zBY1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L26 | ECOD (1.6) |
OB [auth BZ] | Ribosomal_L27e | e7o7zBZ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L27e | ECOD (1.6) |
PB [auth Ba] | Ribosomal_L18 | e7o7zBa1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
QB [auth Bb] | Ribosomal_L29e | e7o7zBb1 | A: extended segments | X: RPL29 (From Topology) | H: RPL29 (From Topology) | T: RPL29 | F: Ribosomal_L29e | ECOD (1.6) |
G [auth AF] | DUF1899 | e7o7zAF1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: DUF1899 | ECOD (1.6) |
RB [auth Bc] | Ribosomal_L7Ae | e7o7zBc1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
SB [auth Bd] | Ribosomal_L31e | e7o7zBd1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: Ribosomal_L31e | ECOD (1.6) |
UB [auth Bf] | Ribosomal_L35Ae | e7o7zBf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L35Ae | ECOD (1.6) |
VB [auth Bg] | Ribosomal_L34e | e7o7zBg1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: Ribosomal_L34e | ECOD (1.6) |
WB [auth Bh] | Ribosomal_L29_2 | e7o7zBh1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29_2 | ECOD (1.6) |
XB [auth Bi] | Ribosomal_L36e | e7o7zBi1 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: Ribosomal_L36e | ECOD (1.6) |
YB [auth Bj] | Ribosomal_L37e | e7o7zBj1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37e | ECOD (1.6) |
AC [auth Bl] | Ribosomal_L39 | e7o7zBl1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: Ribosomal_L39 | ECOD (1.6) |
BC [auth Bm] | Ribosomal_L40e | e7o7zBm1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L40e | ECOD (1.6) |
DC [auth Bp] | Ribosomal_L37ae | e7o7zBp1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37ae | ECOD (1.6) |
EC [auth Br] | Ribosomal_L28e | e7o7zBr1 | A: a+b two layers | X: RPL28 (From Topology) | H: RPL28 (From Topology) | T: RPL28 | F: Ribosomal_L28e | ECOD (1.6) |
HC [auth Bv] | Ribosomal_L1_2nd_1 | e7o7zBv2 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: Ribosomal_L1_2nd_1 | ECOD (1.6) |
HC [auth Bv] | Ribosomal_L1_1st_1 | e7o7zBv1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: Ribosomal_L1_1st_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth AB] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | - | Family |
H [auth AG] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
J [auth AI] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
PA [auth BA] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
RA [auth BC] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
RA [auth BC] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
RA [auth BC] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
TA [auth BE] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
TA [auth BE] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
XA [auth BI] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
XA [auth BI] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
AB [auth BL] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
DB [auth BO] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
KB [auth BV] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
KB [auth BV] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
K [auth AT] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
L [auth AZ] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
L [auth AZ] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
L [auth AZ] | PF16122 | 40S ribosomal protein SA C-terminus (40S_SA_C) | 40S ribosomal protein SA C-terminus | - | Family |
B [auth AA] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
D [auth AC] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
D [auth AC] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
D [auth AC] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
QA [auth BB] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
SA [auth BD] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
UA [auth BF] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | - | Domain |
WA [auth BH] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
WA [auth BH] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
YA [auth BJ] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
YA [auth BJ] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
YA [auth BJ] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
BB [auth BM] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
CB [auth BN] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
EB [auth BP] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
EB [auth BP] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
GB [auth BR] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |
F [auth AE] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
HB [auth BS] | PF17777 | Insertion domain in 60S ribosomal protein L10P (RL10P_insert) | Insertion domain in 60S ribosomal protein L10P | This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. | Domain |
HB [auth BS] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
IB [auth BT] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
IB [auth BT] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
LB [auth BW] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
MB [auth BX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
NB [auth BY] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
NB [auth BY] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
OB [auth BZ] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
OB [auth BZ] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
G [auth AF] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
G [auth AF] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
EA [auth As] | NMM | Parent Component: ARG |
GA [auth Au] | AME | Parent Component: MET |
MA [auth B5] | 1MA | Parent Component: A |
MA [auth B5] | 5MC | Parent Component: C |
MA [auth B5] | 6MZ | Parent Component: A |
MA [auth B5] | A2M | Parent Component: A |
MA [auth B5] | OMC | Parent Component: C |
MA [auth B5] | OMG | Parent Component: G |
MA [auth B5] | OMU | Parent Component: U |
MA [auth B5] | PSU | Parent Component: U |
MA [auth B5] | UR3 | Parent Component: U |
MA [auth B5] | UY1 | |
OA [auth B8] | OMG | Parent Component: G |
OA [auth B8] | PSU | Parent Component: U |
PA [auth BA] | V5N | Parent Component: HIS |
RA [auth BC] | AYA | Parent Component: ALA |
CC [auth Bo] | MLZ | Parent Component: LYS :  AA0076 :  N6-methyl-L-lysine MOD:00085 |
A [auth A2] | 4AC | AA0076 | : 
A [auth A2] | 6MZ | Parent Component: A :  AA0076 |
A [auth A2] | A2M | Parent Component: A :  AA0076 |
A [auth A2] | B8N | AA0076 | : 
A [auth A2] | G7M | Parent Component: G :  AA0076 |
A [auth A2] | MA6 | Parent Component: A :  AA0076 |
A [auth A2] | OMC | Parent Component: C :  AA0076 |
A [auth A2] | OMG | Parent Component: G :  AA0076 |
A [auth A2] | OMU | Parent Component: U :  AA0076 |
A [auth A2] | PSU | Parent Component: U :  AA0076 |
K [auth AT] | 1MA | Parent Component: A :  AA0076 |
K [auth AT] | 2MG | Parent Component: G :  AA0076 |
K [auth AT] | 5MC | Parent Component: C :  AA0076 |
K [auth AT] | 5MU | Parent Component: U :  AA0076 |
K [auth AT] | G7M | Parent Component: G :  AA0076 |
K [auth AT] | H2U | Parent Component: U :  AA0076 |
K [auth AT] | M2G | Parent Component: G :  AA0076 |
K [auth AT] | OMC | Parent Component: C :  AA0076 |
K [auth AT] | OMG | Parent Component: G :  AA0076 |
K [auth AT] | PSU | Parent Component: U :  AA0076 |
K [auth AT] | YYG | Parent Component: G :  AA0076 |
L [auth AZ] | SAC | Parent Component: SER :  AA0076 |
DA [auth Ar] | SAC | Parent Component: SER :  AA0076 |
IA [auth Aw] | HY3 | Parent Component: PRO :  AA0076 , AA0029 :  N6-methyl-L-lysine MOD:00085 , 3-hydroxy-L-proline MOD:00038 |
NA [auth B7] | GTP | Parent Component: G :  AA0076 , AA0029 |
QA [auth BB] | HIC | Parent Component: HIS :  AA0076 , AA0029 , AA0317 :  N6-methyl-L-lysine MOD:00085 , 3-hydroxy-L-proline MOD:00038 , 1'-methyl-L-histidine MOD:00322 |
SA [auth BD] | AAC | AA0076 , AA0029 , AA0317 | : 
PB [auth Ba] | V5N | Parent Component: HIS :  AA0076 , AA0029 , AA0317 |
QB [auth Bb] | MLZ | Parent Component: LYS :  AA0076 , AA0029 , AA0317 , AA0076 :  N6-methyl-L-lysine MOD:00085 , 3-hydroxy-L-proline MOD:00038 , 1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085 |
BC [auth Bm] | M3L | Parent Component: LYS :  AA0076 , AA0029 , AA0317 , AA0076 , AA0074 :  N6-methyl-L-lysine MOD:00085 , 3-hydroxy-L-proline MOD:00038 , 1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085 , N6,N6,N6-trimethyl-L-lysine MOD:00083 |
EC [auth Br] | SAC | Parent Component: SER :  AA0076 , AA0029 , AA0317 , AA0076 , AA0074 |