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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hassaan, E."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (6)
	Trypanosoma brucei brucei (3)
	Cryphonectria parasitica (2)
	Zymomonas mobilis (2)
	Cricetulus griseus (1)
	Mus musculus (1)

Taxonomy

	Bacteria (8)
	Eukaryota (6)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (7)

Release Date

	2015 - 2019 (6)
	2020 - 2024 (8)

Enzyme Classification Name

	Transferases (9)
	Hydrolases (2)

Symmetry Type

	Asymmetric (6)
	Cyclic (8)

SCOP Classification

Alpha and beta proteins (a/b) (8)

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1 to 14 of 14 Structures

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5N6F \| pdb_00005n6f	Download File View File

Crystal structure of TGT in complex with guanine fragment

Hassaan, E., Heine, A., Klebe, G.

(2020) ChemMedChem 15: 324-337

Released	2018-03-07
Method	X-RAY DIFFRACTION 1.11909520042 Å
Organisms	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	DMS, GUN, PEG, PGE, ZN

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5SW3 \| pdb_00005sw3	Download File View File

Crystal Structure of TGT in complex with 3-Pyridinecarboxylic acid, 6-(dimethylamino)

Hassaan, E., Heine, A., Klebe, G.

(2020) ChemMedChem 15: 324-337

Released	2017-07-19
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	46L, DMS, PEG, PG4, ZN

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5UTI \| pdb_00005uti	Download File View File

Crystal Structure of TGT in complex with fragment in preQ1 pocket

Hassaan, E., Heine, A., Klebe, G.

(2020) ChemMedChem 15: 324-337

Released	2018-03-07
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	DMS, GGB, PG4, PGE, ZN

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5UTJ \| pdb_00005utj	Download File View File

Crystal Structure of TGT in complex with 2,6-dioxy-8-azapurine, 2,6-dioxy-8-azapurine, 2,6-dioxy-8-azapurine

Hassaan, E., Heine, A., Klebe, G.

(2020) ChemMedChem 15: 324-337

Released	2018-03-07
Method	X-RAY DIFFRACTION 1.549 Å
Organisms	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	AZA, DMS, PEG, ZN

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5V3C \| pdb_00005v3c	Download File View File

Crystal structure of TGT in complex with 4-(aminomethane)cyclohexane-1-carboxylic acid

Hassaan, E., Heine, A., Klebe, G.

(2020) ChemMedChem 15: 324-337

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.419 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	AMH, DMS, PEG, PGE, ZN

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6FSO \| pdb_00006fso	Download File View File

Crystal Structure of TGT in complex with methyl({[5-(pyridin-3-yloxy)furan-2-yl]methyl})amine

Hassaan, E., Heine, A., Klebe, G.

(2020) ChemMedChem 15: 324-337

Released	2019-03-20
Method	X-RAY DIFFRACTION 1.449 Å
Organisms	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	ACT, DMS, F63, PEG, PG4, PGE, ZN

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6RKQ \| pdb_00006rkq	Download File View File

Crystal Structure of TGT in complex with N2-methyl-8-(prop-1-yn-1-yl)-3H,7H,8H-imidazo[4,5-g]quinazoline-2,6-diamine

Hassaan, E., Heine, A., Klebe, G.

(2020) J Med Chem 63: 6802-6820

Released	2020-06-03
Method	X-RAY DIFFRACTION 1.665 Å
Organisms	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	DMS, GOL, K75, ZN

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6RKT \| pdb_00006rkt	Download File View File

Crystal Structure of TGT in complex with N2-methyl-1H,7H,8H-imidazo[4,5-g]quinazoline-2,6-diamine

Hassaan, E., Heine, A., Klebe, G.

(2020) J Med Chem 63: 6802-6820

Released	2020-06-03
Method	X-RAY DIFFRACTION 1.746 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	DMS, GOL, K7H, ZN

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6S6R \| pdb_00006s6r	Download File View File

First crystal structure of parasitic PEX14 in complex with a fragment molecule 1H-indole-7-carboxylic acid

Hassaan, E., Heine, A., Klebe, G.

To be published

Released	2020-07-15
Method	X-RAY DIFFRACTION 1.58000903163 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Peroxin 14 (protein)
Unique Ligands	DMS, GOL, KXQ, SO4

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6S7M \| pdb_00006s7m	Download File View File

Structure of parasitic PEX14 in complex with a benzo[b]thiophene-7-carboxylic acid.

Hassaan, E., Heine, A., Klebe, G.

To be published

Released	2020-07-15
Method	X-RAY DIFFRACTION 1.75845964621 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Peroxin 14 (protein)
Unique Ligands	KZ2, PEG

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6S9Y \| pdb_00006s9y	Download File View File

Crystal structure of the N-terminal domain of the wild type parasitic PEX14

Hassaan, E., Heine, A., Klebe, G.

To be published

Released	2020-08-26
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Peroxin 14 (protein)
Unique Ligands	PEG

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6YPP \| pdb_00006ypp	Download File View File

Crystal structure of the cAMP-dependent protein kinase A cocrystallized with PKI (5-24). Soaking of aminofasudil and displacing it with the fragment isoquinoline.

Oebbeke, M., Gerber, H.-D., Heine, A., Klebe, G.

To be published

Released	2021-04-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Cricetulus griseus Mus musculus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) cAMP-dependent protein kinase inhibitor alpha (protein)
Unique Ligands	ISQ

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6ZZ2 \| pdb_00006zz2	Download File View File

Cocktail experiment E: fragments 52, 58, and 63 at 90 mM concentration in complex with Endothiapepsin

Hassaan, E., Klebe, G., Heine, A., Schiebel, J., Koester, H.

To be published

Released	2021-08-11
Method	X-RAY DIFFRACTION 1.14885439131 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	DMS, F63, GOL

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7ADG \| pdb_00007adg	Download File View File

Cocktail experiment G: fragments 216 and 338 at 90 mM concentration in complex with Endothiapepsin

Hassaan, E., Klebe, G., Heine, A., Schiebel, J., Koester, H.

To be published

Released	2021-10-06
Method	X-RAY DIFFRACTION 1.07946365588 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	483, 8NE, ACT, DMS, GOL

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5N6F | pdb_00005n6f

Crystal structure of TGT in complex with guanine fragment

5SW3 | pdb_00005sw3

Crystal Structure of TGT in complex with 3-Pyridinecarboxylic acid, 6-(dimethylamino)

5UTI | pdb_00005uti

Crystal Structure of TGT in complex with fragment in preQ1 pocket

5UTJ | pdb_00005utj

Crystal Structure of TGT in complex with 2,6-dioxy-8-azapurine, 2,6-dioxy-8-azapurine, 2,6-dioxy-8-azapurine

5V3C | pdb_00005v3c

Crystal structure of TGT in complex with 4-(aminomethane)cyclohexane-1-carboxylic acid

6FSO | pdb_00006fso

Crystal Structure of TGT in complex with methyl({[5-(pyridin-3-yloxy)furan-2-yl]methyl})amine

6RKQ | pdb_00006rkq

Crystal Structure of TGT in complex with N2-methyl-8-(prop-1-yn-1-yl)-3H,7H,8H-imidazo[4,5-g]quinazoline-2,6-diamine

6RKT | pdb_00006rkt

Crystal Structure of TGT in complex with N2-methyl-1H,7H,8H-imidazo[4,5-g]quinazoline-2,6-diamine

6S6R | pdb_00006s6r

First crystal structure of parasitic PEX14 in complex with a fragment molecule 1H-indole-7-carboxylic acid

6S7M | pdb_00006s7m

Structure of parasitic PEX14 in complex with a benzo[b]thiophene-7-carboxylic acid.

6S9Y | pdb_00006s9y

Crystal structure of the N-terminal domain of the wild type parasitic PEX14

6YPP | pdb_00006ypp

Crystal structure of the cAMP-dependent protein kinase A cocrystallized with PKI (5-24). Soaking of aminofasudil and displacing it with the fragment isoquinoline.

6ZZ2 | pdb_00006zz2

Cocktail experiment E: fragments 52, 58, and 63 at 90 mM concentration in complex with Endothiapepsin

7ADG | pdb_00007adg

Cocktail experiment G: fragments 216 and 338 at 90 mM concentration in complex with Endothiapepsin

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5N6F | pdb_00005n6f

5SW3 | pdb_00005sw3

5UTI | pdb_00005uti

5UTJ | pdb_00005utj

5V3C | pdb_00005v3c

6FSO | pdb_00006fso

6RKQ | pdb_00006rkq

6RKT | pdb_00006rkt

6S6R | pdb_00006s6r

6S7M | pdb_00006s7m

6S9Y | pdb_00006s9y

6YPP | pdb_00006ypp

6ZZ2 | pdb_00006zz2

7ADG | pdb_00007adg