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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Nascimento, A.F.Z."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (12)
	Homo sapiens (9)
	Gallus gallus (3)
	Citrus sinensis (2)
	Corynebacterium pseudotuberculosis C231 (2)
	Thermotoga petrophila RKU-1 (2)
	Arabidopsis thaliana (1)
	Bos taurus (1)
	Concholepas concholepas (1)
	Mycobacterium tuberculosis H37Rv (1)

More...

Taxonomy

	Eukaryota (17)
	Riboviria (12)
	Bacteria (7)

Experimental Method

X-RAY DIFFRACTION (36)

Polymer Entity Type

Protein (36)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (15)
	2.0 - 2.5 (10)
	2.5 - 3.0 (7)

Release Date

	2010 - 2014 (7)
	2015 - 2019 (7)
	2020 - 2024 (22)

Enzyme Classification Name

Hydrolases (20)

Symmetry Type

	Asymmetric (17)
	Cyclic (18)
	Dihedral (2)

SCOP Classification

	All beta proteins (12)
	Alpha and beta proteins (a+b) (5)
	Artifacts (5)
	All alpha proteins (3)

AllSelected

1 to 25 of 36 Structures

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4J5L \| pdb_00004j5l	Download File View File

Structure of the Cargo Binding Domain from Human Myosin Va

Nascimento, A.F.Z., Trindade, D.M., Tonoli, C.C.C., Assis, L.H.P., Mahajan, P., Berridge, G., Krojer, T., Vollmar, M., Burgess-Brown, N., von Delft, F., Murakami, M.T.

(2013) J Biological Chem 288: 34131-34145

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Unconventional myosin-Va (protein)
Unique Ligands	SO4

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4J5M \| pdb_00004j5m	Download File View File

Structure of the Cargo Binding Domain from Human Myosin Vb

Nascimento, A.F.Z., Trindade, D.M., Mahajan, P., Berridge, G., Krojer, T., Vollmar, M., Tonoli, C.C.C., Assis, L.H.P., Burgess-Brown, N., von Delft, F., Murakami, M.T.

(2013) J Biological Chem 288: 34131-34145

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens
Macromolecule	Unconventional myosin-Vb (protein)
Unique Ligands	NO3

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4KC7 \| pdb_00004kc7	Download File View File

Crystal Structure of Endo-1,5-alpha-L-arabinanase from Thermotoga petrophila RKU-1

Nascimento, A.F.Z., Polo, C.C., Santos, C.R., Costa, M.C.M.F., Mesa, A.N., Prade, R.A., Ruller, R., Squina, F.M., Murakami, M.T.

(2014) J Biological Chem 289: 7362-7373

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Thermotoga petrophila RKU-1
Macromolecule	Glycoside hydrolase, family 43 (protein)
Unique Ligands	CA, PEG

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4KC8 \| pdb_00004kc8	Download File View File

Crystal Structure of Endo-1,5-alpha-L-arabinanase from Thermotoga petrophila RKU-1 in complex with TRIS

Nascimento, A.F.Z., Polo, C.C., Santos, C.R., Costa, M.C.M.F., Mesa, A.N., Prade, R.A., Ruller, R., Squina, F.M., Murakami, M.T.

(2014) J Biological Chem 289: 7362-7373

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Thermotoga petrophila RKU-1
Macromolecule	Glycoside hydrolase, family 43 (protein)
Unique Ligands	CA, TRS

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4KCA \| pdb_00004kca	Download File View File

Crystal Structure of Endo-1,5-alpha-L-arabinanase from a Bovine Ruminal Metagenomic Library

Santos, C.R., Polo, C.C., Costa, M.C.M.F., Nascimento, A.F.Z., Wong, D.W.S., Murakami, M.T.

(2014) J Biological Chem 289: 7362-7373

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	Endo-1,5-alpha-L-arabinanase (protein)
Unique Ligands	GOL, IOD, NA

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4KCB \| pdb_00004kcb	Download File View File

Crystal Structure of Exo-1,5-alpha-L-arabinanase from Bovine Ruminal Metagenomic Library

Santos, C.R., Polo, C.C., Costa, M.C.M.F., Nascimento, A.F.Z., Wong, D.W.S., Murakami, M.T.

(2014) J Biological Chem 289: 7362-7373

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	uncultured bacterium
Macromolecule	Arabinan endo-1,5-alpha-L-arabinosidase (protein)
Unique Ligands	PO4

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4L8T \| pdb_00004l8t	Download File View File

Structure of the Cargo Binding Domain from Human Myosin Vc

Nascimento, A.F.Z., Tonoli, C.C.C., Trindade, D.M., Assis, L.H.P., Mahajan, P., Berridge, G., Krojer, T., Burgess-Brown, N., von Delft, F., Murakami, M.T.

(2013) J Biological Chem 288: 34131-34145

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Unconventional myosin-Vc (protein)

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5U4Z \| pdb_00005u4z	Download File View File

Crystal structure of citrus MAF1 in space group P 31 2 1

Soprano, A.S., Giuseppe, P.O., Nascimento, A.F.Z., Benedetti, C.E., Murakami, M.T.

To be published

Released	2017-07-19
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Citrus sinensis
Macromolecule	Repressor of RNA polymerase III transcription (protein)
Unique Ligands	SO4

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5U50 \| pdb_00005u50	Download File View File

Crystal structure of citrus MAF1 in space group C 2 2 21

Soprano, A.S., Giuseppe, P.O., Nascimento, A.F.Z., Benedetti, C.E., Murakami, M.T.

To be published

Released	2017-07-19
Method	X-RAY DIFFRACTION 2.902 Å
Organisms	Citrus sinensis
Macromolecule	Repressor of RNA polymerase III transcription (protein)

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5VOK \| pdb_00005vok	Download File View File

Crystal structure of the C7orf59-HBXIP dimer

Rasheed, N., Nascimento, A.F.Z., Bar-Peled, L., Shen, K., Sabatini, D.M., Aparicio, R., Smetana, J.H.C.

(2019) FEBS Open Bio

Released	2018-05-23
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens
Macromolecule	Ragulator complex protein LAMTOR4 (protein) Ragulator complex protein LAMTOR5 (protein)

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6B7U \| pdb_00006b7u	Download File View File

Structure of hen egg-white lysozyme without high-pressure pre-treatment

Morais, M.A.B., Nascimento, A.F.Z., Tominaga, C.Y., Cristianini, M., Tribst, A.A.L., Murakami, M.T.

(2018) Innov Food Sci Emerg Technol 47: 195-203

Released	2018-07-25
Method	X-RAY DIFFRACTION 1.581 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	ACT, CL, GOL, NA

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6B7V \| pdb_00006b7v	Download File View File

Structure of hen egg-white lysozyme pre-treated with high-pressure homogenization at 120 MPa

Morais, M.A.B., Nascimento, A.F.Z., Tominaga, C.Y., Cristianini, M., Tribst, A.A.L., Murakami, M.T.

(2018) Innov Food Sci Emerg Technol 47: 195-203

Released	2018-07-25
Method	X-RAY DIFFRACTION 1.482 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	ACT, CL, GOL, NA

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6B7W \| pdb_00006b7w	Download File View File

Structure of hen egg-white lysozyme pre-treated with high pressure (600 MPa) under isobaric condition

Morais, M.A.B., Nascimento, A.F.Z., Tominaga, C.Y., Cristianini, M., Tribst, A.A.L., Murakami, M.T.

(2018) Innov Food Sci Emerg Technol 47: 195-203

Released	2018-07-25
Method	X-RAY DIFFRACTION 1.482 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	ACT, CL, GOL, NA

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6DDN \| pdb_00006ddn	Download File View File

The sulfate-binding protein SubI from Mycobacterium tuberculosis H37Rv

Meza, A.N., Balan, A., Nascimento, A.F.Z.

To be published

Released	2019-05-15
Method	X-RAY DIFFRACTION 2.295 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable sulfate-binding lipoprotein SubI (protein)
Unique Ligands	ACT, PEG, SO4

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6WB3 \| pdb_00006wb3	Download File View File

Crystal structure of coiled coil region of human septin 4

Cabrejos, D.A.L., Cavini, I., Sala, F.A., Valadares, N.F., Pereira, H.M., Brandao-Neto, J., Nascimento, A.F.Z., Uson, I., Araujo, A.P.U., Garratt, R.C.

(2021) J Mol Biology 433: 166889-166889

Released	2021-03-17
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Septin-4 (protein)
Unique Ligands	ACT, SO4

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6WBE \| pdb_00006wbe	Download File View File

Crystal structure of coiled coil region of human septin 1

Cabrejos, D.A.L., Cavini, I., Sala, F.A., Valadares, N.F., Pereira, H.M., Brandao-Neto, J., Nascimento, A.F.Z., Uson, I., Araujo, A.P.U., Garratt, R.C.

(2021) J Mol Biology 433: 166889-166889

Released	2021-03-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Septin-1 (protein)
Unique Ligands	ACT, ZN

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6WBP \| pdb_00006wbp	Download File View File

Crystal structure of coiled coil region of human septin 6

Cabrejos, D.A.L., Cavini, I., Sala, F.A., Valadares, N.F., Pereira, H.M., Brandao-Neto, J., Nascimento, A.F.Z., Uson, I., Araujo, A.P.U., Garratt, R.C.

(2021) J Mol Biology 433: 166889-166889

Released	2021-03-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Septin-6 (protein)
Unique Ligands	CIT, SO4

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6WCU \| pdb_00006wcu	Download File View File

Crystal structure of coiled coil region of human septin 5

Cabrejos, D.A.L., Cavini, I., Sala, F.A., Valadares, N.F., Pereira, H.M., Brandao-Neto, J., Nascimento, A.F.Z., Uson, I., Araujo, A.P.U., Garratt, R.C.

(2021) J Mol Biology 433: 166889-166889

Released	2021-03-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Septin-5 (protein)

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6WJO \| pdb_00006wjo	Download File View File

Crystal structure of wild-type Arginine Repressor from the pathogenic bacterium Corynebacterium pseudotuberculosis bound to tyrosine

Nascimento, A.F.Z., Hernandez-Gonzalez, J.E., de Morais, M.A.B., Murakami, M.T., Carareto, C.M.A., Arni, R.K., Mariutti, R.B.

(2020) Biochim Biophys Acta Gen Subj 1864: 129597

Released	2020-04-22
Method	X-RAY DIFFRACTION 1.693 Å
Organisms	Corynebacterium pseudotuberculosis C231
Macromolecule	Arginine repressor (protein)
Unique Ligands	NA, SO4, TYR

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6WJP \| pdb_00006wjp	Download File View File

Crystal structure of Arginine Repressor P115Q mutant from the pathogenic bacterium Corynebacterium pseudotuberculosis bound to arginine

Nascimento, A.F.Z., Hernandez-Gonzalez, J.E., de Morais, M.A.B., Murakami, M.T., Carareto, C.M.A., Arni, R.K., Mariutti, R.B.

(2020) Biochim Biophys Acta Gen Subj 1864: 129597

Released	2020-04-22
Method	X-RAY DIFFRACTION 1.701 Å
Organisms	Corynebacterium pseudotuberculosis C231
Macromolecule	Arginine repressor (protein)
Unique Ligands	ACT, ARG, GOL, TRS

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6WSM \| pdb_00006wsm	Download File View File

Crystal structure of coiled coil region of human septin 8

Cabrejos, D.A.L., Cavini, I., Sala, F.A., Valadares, N.F., Pereira, H.M., Brandao-Neto, J., Nascimento, A.F.Z., Uson, I., Araujo, A.P.U., Garratt, R.C.

(2021) J Mol Biology 433: 166889-166889

Released	2021-03-17
Method	X-RAY DIFFRACTION 2.451 Å
Organisms	Homo sapiens
Macromolecule	Septin-8 (protein)
Unique Ligands	SO4

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7JR3 \| pdb_00007jr3	Download File View File

SARS-CoV-2 3CL protease crystallized under reducing conditions

de Oliveira, R.R., Nascimento, A.F.Z., Zeri, A.C.M., Trivella, D.B.B.

To be published

Released	2020-08-26
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)

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7JR4 \| pdb_00007jr4	Download File View File

SARS-CoV-2 3CL protease with alternative conformation of the active site promoted by methylene-bridged cysteine and lysine residues

Nascimento, A.F.Z., de Oliveira, R.R., Zeri, A.C.M., Trivella, D.B.B.

To be published

Released	2020-08-26
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	DMS

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7KFI \| pdb_00007kfi	Download File View File

SARS-CoV-2 Main protease immature form - apo structure

Noske, G.D., Nakamura, A.M., Gawriljuk, V.O., Lima, G.M.A., Zeri, A.C.M., Nascimento, A.F.Z., Oliva, G., Godoy, A.S.

(2021) J Mol Biology 433: 167118-167118

Released	2020-10-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	DMS, PEG